LOC113534932


Basic Information

Item Value
gene id LOC113534932
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 11803590 ~ 11805459 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403548.2
CGCTGCTATGATACAGAGCTCTTCAAAAATGAGCCAGCGAAAAAGAATGAAGGATggCTTAAAGACTGAAAGCACCTGGTCACACCACTGAGTCACTCATTCTGGTATCATCCTTGTGCATCTCAGATTGCTCTGTCCAGCAGCCCTGCTCAGTGACTCGAGGAGAGTGTCATTTCTCAGGTTGTTCCCGGCGGCTTGGCGTTGGGCTGTGGAGAGCAGAATGGAATGTTTGAAACAGACTGTTCAATTAGGCGCGTGCTGCTGTGAAATTGCCTCCAAACGATAAGCCTTTATTATTTCTGCTGCCATGCCCAGAGCTGTGCatcacacccacccacacatacactctctctctttctctctctctttctcacacacacacacacacacacgtatgcacAAGCCGTCATACATGGGTTCTCTCTCTGAAAATGCCATCACCAGGTTTTGAAACAACTTTGGATCTTTGTTCATTAGTTACTTCACTTTATGACTgatttctgaacacagctgcattatgtattaattttgttattaatattattcccATGCCCAAATAATACCAAATATTCTGTTCGTCTGTGTGACTTTCCCTCCCTATGTGCTGCGTGTGTCATTATAGATGGACAGCGTGGGAGTCATTTGCTTCTGCTGCGTATCGTTTGCTAAAGGTTAAAGAAAATAACTAATTCctagcaaaagaaaaagagagtgagaatgagagaatgaaagaagtGAGATAGGCTACATGTGTGCAATTATCTACAGTCTATGTGTGGCTCACACAATGGAGAGGAACACTGCAATTAGTCAAGAAATGGTGCTCAGCTAAACAGGGTGTGGGGgagtctctctccctctctctctctctctctcacacacacacacacacacacacgcacgcacgcacgcacacctTCGGGTGCCTCCCACTCAAGTGAAGAGGGCAGAGGGAGAAGGTCGGTAAGCCTTCTGACACTCACACTGTGTTAACAGTTCCACAGTTTTCCCCTGGAATTCACATACTTTTGTTCTTCTGTTGCACACTGAGTTTTGAGAGTGGGGACTGGACAGTTTCCCTTtgttagaaattaaattaaatccatgttaaaatatattaaaatacacattCAAATGACATCCTTACCCAAATCCCATATGAGACTCACCCAAGCATTCACACATTATGTGAAAACACACCCACCGAACCTGATTTTAATTTAGTGAAAAAGTTTTTGTTACTTTATAAACATTTCGAAGTAAAAAGCCATAGTACTGAGCTATAAAAGCATATTATATGGCTGGTATATTATTATGTTAGCACTGGGCTTAATTTTTGGCTGATTTTGATTGACCATTCGGTTGCTTTTGTTATGctaacctggcaaccctgcactCTTACATTTAGGGCTtgactttttttcctcttcaatGTTATTCTTTCTGCAATATGCTAAATGGACTTTATGTTGACCATAAACAAAATAGCAGGAATAAGAGACGCAAATGTaaattgtgcatgtgtgtgtacatttaatttatctgtgtaatgtgtgaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403548.2 True 1558 lncRNA 0.41 3 11803590 11805459

Neighbor

gene id symbol gene type direction distance location
LOC113534407 stac3 coding upstream 42987 11754563 ~ 11760603 (+)
LOC113526407 r3hdm2 coding upstream 50372 11695631 ~ 11753218 (+)
arhgap9 arhgap9 coding upstream 224459 11536329 ~ 11579131 (+)
ddit3 ddit3 coding upstream 282680 11517494 ~ 11520910 (+)
dctn2 dctn2,LOC107558166 coding upstream 303074 11486737 ~ 11500516 (+)
LOC113547077 nxph4,LOC107556734,LOC107758187,LOC107676147,LOC107735585 coding downstream 27248 11832707 ~ 11892740 (+)
shmt2 shmt2,LOC107758195,LOC103359782 coding downstream 96759 11902218 ~ 11937563 (+)
h6pd h6pd coding downstream 214787 12020246 ~ 12026634 (+)
cenps LOC108271797,LOC107713529,LOC107708744,LOC107555976 coding downstream 226588 12032047 ~ 12035789 (+)
cfap20dc c11h3orf67 coding downstream 377588 12183047 ~ 12203172 (+)
G25452 NA non-coding upstream 11465 11732424 ~ 11792125 (+)
LOC117599151 NA non-coding upstream 115366 11668819 ~ 11688224 (+)
G25434 NA non-coding upstream 140496 11662230 ~ 11663094 (+)
G25422 gli1 non-coding upstream 180521 11619169 ~ 11623069 (+)
G25410 NA non-coding upstream 217947 11585407 ~ 11585643 (+)
G25624 LOC108271795 non-coding downstream 140634 11946093 ~ 12038014 (+)
LOC113533008 NA non-coding downstream 151769 11957228 ~ 11974989 (+)
G25872 NA non-coding downstream 469393 12274852 ~ 12275052 (+)
G25882 NA non-coding downstream 487464 12292923 ~ 12293129 (+)
G25886 NA non-coding downstream 490152 12295611 ~ 12296042 (+)
G25029 NA other upstream 895018 10906200 ~ 10908572 (+)
G24500 NA other upstream 1605135 10197966 ~ 10198455 (+)
manbal manbal other upstream 1862403 9938365 ~ 9941187 (+)
LOC113530691 LOC108410934,LOC108272263,LOC107696444,LOC107587591,LOC107744363 other upstream 1880425 9874708 ~ 9923165 (+)
LOC113532547 LOC108271588 other upstream 2200084 9591941 ~ 9603506 (+)
si:dkeyp-67f1.2 fam3d,LOC108272267 other downstream 398982 12204441 ~ 12213657 (+)
G25908 LOC108272198 other downstream 720711 12526170 ~ 12527491 (+)
si:ch211-286o17.1 NA other downstream 923534 12728993 ~ 12751277 (+)
si:dkey-238f9.1 si:dkey-238f9.1,LOC108271548,LOC103034279,LOC108427543,LOC107567673,LOC107729782,LOC107666167,LOC106582736 other downstream 1460329 13265788 ~ 13332177 (+)
tshba tshb,LOC108271948 other downstream 1684702 13490161 ~ 13506004 (+)

Expression


Co-expression Network