LOC113537259


Basic Information

Item Value
gene id LOC113537259
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 10754515 ~ 10754622 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403740.2
GTGCTTGCTACGGCAGCACATGTACTAAAATTGAAACGATACAGAGAAGATTAGCATGGCCCCTGGCGCAAGGATGATACGCAAATTcgtgagagaaagagtgactGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403740.2 True 108 ncRNA 0.46 1 10754515 10754622

Neighbor

gene id symbol gene type direction distance location
tfap2c tfap2c,LOC102234024 coding upstream 386498 10354311 ~ 10368017 (+)
rtf2 rtfdc1,LOC107740265,LOC107666131,LOC107744351,LOC107681290 coding upstream 438990 10289199 ~ 10315525 (+)
nat8l2 LOC108271756 coding upstream 546081 10203574 ~ 10208434 (+)
ncoa5 ncoa5 coding upstream 709733 10034633 ~ 10044782 (+)
pltp pltp coding upstream 729149 10011535 ~ 10025366 (+)
necab3 necab3,LOC108271560,LOC108431835,LOC107666033,LOC107744391,LOC107681272 coding downstream 180082 10934704 ~ 10974521 (+)
snta1 snta1,LOC107681301,LOC107587638 coding downstream 273686 11028308 ~ 11058982 (+)
ralgapb ralgapb,LOC107681280 coding downstream 458723 11213345 ~ 11252653 (+)
LOC113533429 kcnq2,LOC107681271,LOC100537363 coding downstream 508508 11263130 ~ 11312925 (+)
arfrp1 arfrp1,LOC102305184 coding downstream 568148 11322770 ~ 11327587 (+)
G24759 NA non-coding upstream 264227 10489288 ~ 10490288 (+)
G24751 NA non-coding upstream 301753 10452249 ~ 10452762 (+)
LOC113534804 NA non-coding upstream 358971 10381401 ~ 10395544 (+)
G24670 NA non-coding upstream 433719 10320531 ~ 10320796 (+)
G24668 NA non-coding upstream 435686 10318618 ~ 10318829 (+)
G24989 NA non-coding downstream 66845 10821467 ~ 10847125 (+)
G25035 NA non-coding downstream 161434 10916056 ~ 10918504 (+)
G25110 NA non-coding downstream 479500 11234122 ~ 11234603 (+)
LOC117598838 NA non-coding downstream 570788 11325410 ~ 11327031 (+)
G25344 NA non-coding downstream 672777 11427399 ~ 11427789 (+)
G24500 NA other upstream 556060 10197966 ~ 10198455 (+)
manbal manbal other upstream 813328 9938365 ~ 9941187 (+)
LOC113530691 LOC108410934,LOC108272263,LOC107696444,LOC107587591,LOC107744363 other upstream 831350 9874708 ~ 9923165 (+)
LOC113532547 LOC108271588 other upstream 1151009 9591941 ~ 9603506 (+)
hmga1b NA other upstream 1300053 9450925 ~ 9454462 (+)
G25029 NA other downstream 151578 10906200 ~ 10908572 (+)
si:dkeyp-67f1.2 fam3d,LOC108272267 other downstream 1449819 12204441 ~ 12213657 (+)
G25908 LOC108272198 other downstream 1771548 12526170 ~ 12527491 (+)
si:ch211-286o17.1 NA other downstream 1974371 12728993 ~ 12751277 (+)
si:dkey-238f9.1 si:dkey-238f9.1,LOC108271548,LOC103034279,LOC108427543,LOC107567673,LOC107729782,LOC107666167,LOC106582736 other downstream 2511166 13265788 ~ 13332177 (+)

Expression


Co-expression Network