LOC113538428


Basic Information

Item Value
gene id LOC113538428
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 23177932 ~ 23187094 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403844.2
TCTACACATCCACACCTCCATGCCTTCAAAACAGGACAGACCTGAGGAGGAACAGCAGCAACTTCTCTCTGCGGCGACGCACTGAAATCAGCCCTGGCTCTCTGTCTGAGCGAACAGCATGGCAGggaaagataagagagaaagagaaagcagcaCCATAGACATCTACATGGATAAGAAGAATAATAACTGGTCCAAGTGCACAAAAAGGATTGTCTTGCTGGGATTGTGacctaataatattaatttaccACTGGCTAAAAAGTGACATAATAAGTTGATTATGCCAAGCCCTTCATTGCTCATTCTCTCATGCTGTTCCGGATTGATGGAGGCCAACGTCACATTTCCTTCACCATGGCAGCGATGTCCTCGGCCACACGCCAGAACCCCTTTGATTAATCTGTCTCCTCTCTTCTAATCATTGTCCCAGCAGGAGAGAGCTGCCATGTGTTTTAAACACCATgccatcacacactgatttggGGCTGCTTTATGAGACTGACCTCCCGCAGACActcaaatataaacacacttttacaaTCTGACACACTCAATCAGGAATGCCCATGTTTAAGTGATGGCCAAGATTAACCATAttcttatacatttttttgATATGCATATTAACGTGTAAGGCAAATTCTGACTTGCTACAGTACCAGCACTTACTCCTGTATCTTGGCCTTGTGATGTAATGTGACTCTTTTCTCATCCATATCTTTGAATACCCTCTTATGTTCCACAAACCAAGAAGAATCAAGATGGCGCCGATGACTCCAGATGCTGTCATGGCTGATcctttaagacttttttttttctaaatcaaattttatttagtaCTTTTGCCACCACAGAAGCAGACCAAAACAAAGGTCGCATGCTCTGGAGGAGGCGCAGAAAACATAGATAGAAGCACCCAGGTGTGCGAAACTAAAAGCACTCTGTCCACTTCTGCCCAGTATACTGCTCGCCAATGTATAGTCCATAGAAAACAAGCTTGACAACATAAGAACAAGAGTTTGTTTCTGATGTGACATGAGAAACTGCAATATCCTTTGTGTCACCAAAACATGGCTTACCCCCAGTACGAGATCAGTCCATTCAACCTGCGCAGTCCTATTCTATTTTCCAAATGGACAGAGCAGAGCATAGGAGTCCAGAAAATCCAAAGGAGGAGGAGTCTGTTTTATGACCAACAACAACTGGTGTGATGCTAGGAACATTGCTGTTCTCTCCCATTCCTGTTCACCAAACCTGGACCACCCGAAAATCAGATGCCACCCCTTCTACCTGCCTCGAGAGTTCACCTCGGTCATCATCCCAGCCGTTTACATCCCATCTCATGCAGACATGCACATTGCCTTATCTCCAAGTCATGATACATTCAACAGCCTTTAGAACAAATATCCAGACAATGACCTCATCATAACCAGGGGCTTAAAACCAAGGCCAACTTAAAAACAGGTCATGCCAAACTTCAACCAACATATCATGTGCTCTACCAGGGGTGTAAAGACAATGGACCACTGCTACACACAATTCAAGAAGGCTTACAAGGCCACTTCAATGCCTGTTTTTAATCCTGTTTAAATCCAACCATGCTGCCATCTTTCTCATACTGGAATATAAACAAAGTATGTTGCAGGAAGCCTTTGAAACACAATGATATAGTGTCTGAAGCTTTCCATAGAGTTCATTATCCATTATCAGCTTTTGCCTGCtcttgttttgtgtgaaaagacGAGAGGAGGGTGAAACTGATACAAACTGATACACACATTCGTACAAGCACATCTAAATCCATGGTGAAAGAAACTATGCACTGCTATAGTGTTGGCAAGAGCACTGGAAATACTGCAGCAAGGTTTTTGGACATGGTGGGATGGAACCAAAGAAAGGAAGATCATACGCAGACTCATGGTCAAAAGCAGGATCAAATCAGCATCAAAGCAGACACATGGTCAATGGAAACAAGCAGCATGAAGTTCCTTCTGCCTAACCCTAGTGTCTATGATGTCCTCCCAGGACCCAAAATTGTTGTCAATGTTGGGGCTGAAGAAAGACCCAAGCTTGACACTCTGCTGGAAGCAAGCTACCCTACAACACATTCTGTCTTCAAACAGGGCAGCACTTGCAGAAGAAAGATATCATTAGAGGCATAGCAGGGTGTTAACTTCATTGAAGGGACTTCTGGAAGAAGTCCTTTTCATCAGTGAAGAGACGCTACAAACACCAGTGAGAATGGTTTGCTTGAAATAGCCACCTACTGTGATGTGTGGATGGACAATCAGCAGTGGTTCATCTTCCAACAGGACTGAATATAGACACATTACTGAGGCCAGACCTGTTAATCTGGTTCAGGGCAACAAAAGTCATTATCAAGCTGGAGCAGATAGTTCCAGAAAAAGATTATTACTGTTTCAATGTGATATGACCATAATCATACATTACTGAGgtaaat

Function

GO:

id name namespace
GO:0004032 alditol molecular_function
GO:0004033 aldo-keto reductase (NADP) activity molecular_function
GO:0008106 alcohol dehydrogenase (NADP+) activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403844.2 True 2464 lncRNA 0.43 3 23177932 23187094

Neighbor

gene id symbol gene type direction distance location
ap1m3 ap1m3,LOC108271949,LOC108441657,LOC107724146,LOC107684323 coding upstream 14277 23141011 ~ 23163655 (+)
c2h1orf210 c11h1orf210 coding upstream 38736 23134161 ~ 23139196 (+)
orc1 orc1,LOC107725193 coding upstream 92191 23072121 ~ 23085741 (+)
LOC113538154 tspan1 coding upstream 132538 23027962 ~ 23045394 (+)
mast2 mast2 coding upstream 450484 22604981 ~ 22727448 (+)
lrp8 lrp8,LOC108272272,LOC107758363,LOC108238419 coding downstream 90849 23277943 ~ 23453663 (+)
trnaf-gaa_16 NA coding downstream 288857 23475951 ~ 23476023 (+)
il23r LOC108272282 coding downstream 308654 23495748 ~ 23530384 (+)
il12rb2 LOC108271892 coding downstream 346084 23533178 ~ 23551944 (+)
rgs4 LOC108272266 coding downstream 649240 23836334 ~ 23839590 (+)
LOC117599173 NA non-coding upstream 151433 22988121 ~ 23026499 (+)
G31979 NA non-coding upstream 366926 22809395 ~ 22811006 (+)
G31944 NA non-coding upstream 592742 22582349 ~ 22585190 (+)
G31878 NA non-coding upstream 663919 22504504 ~ 22514013 (+)
G31856 NA non-coding upstream 692485 22481404 ~ 22485447 (+)
G32310 NA non-coding downstream 268866 23455960 ~ 23459381 (+)
G32466 serbp1a,serbp1,LOC108271890,LOC107594603,LOC107692416,LOC107758366,LOC107384419 non-coding downstream 329310 23516404 ~ 23560789 (+)
LOC113538216 NA non-coding downstream 373628 23560722 ~ 23562633 (+)
G32502 NA non-coding downstream 427769 23614863 ~ 23615065 (+)
LOC113538279 NA non-coding downstream 475860 23662954 ~ 23666933 (+)
tmem69 tmem69 other upstream 574496 22597595 ~ 22603436 (+)
insl5a insl5 other upstream 2160065 21014838 ~ 21017867 (+)
dlg1 dlg1,LOC108271975,LOC108427717,LOC107738730 other upstream 2519852 20536973 ~ 20658080 (+)
LOC113543059 c11h1orf146 other upstream 3157706 20000046 ~ 20020226 (+)
smx5 lsm2,LSM2,smx5 other upstream 3640735 19534345 ~ 19537197 (+)
uhmk1 uhmk1,LOC107692420 other downstream 446512 23633606 ~ 23653555 (+)
G32684 NA other downstream 833284 24020378 ~ 24021036 (+)
LOC117598985 NA other downstream 1465896 24652990 ~ 24656248 (+)
trak2 LOC108271640 other downstream 2569720 25756814 ~ 25784890 (+)
agap1 agap1,LOC108272907,LOC103044997,LOC107586321,LOC107688827,LOC107709574 other downstream 3078403 26265497 ~ 26408396 (+)

Expression


Co-expression Network