LOC117596060


Basic Information

Item Value
gene id LOC117596060
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 24763427 ~ 24764691 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577233.1
CATACTTTGTATGTCACCTGAGTGCTTGTTGTCGACCTCTAAAGACTGCTcctaaaatgtacataaaattACAATGTACAGATCCCTTGTTTAGACTTGATGACTCCAGCAGCATGAACAGCATGTTCTCAATGAAGATTCCTGCTGAAGATATACACGAGTCTCCTGGTCTTCATTTCTGAGTTTCCAGCAGAAGCCTTGCTGTTTGCTAGCCAGCTGTCACTCCACTTTACACCTCGCCTGATTGCAGCACTGATCACAACTGTTCTACTCACCCAGGACGCAGCGTATATAAACCCCGGTTCTTCAGGCACTTATAGGCAGATTGTTCCGGCTTCCAGGGTGGTTTACTGCTCACCCAGCCTGTCAGCTCTCTGTCTGCTCACTTCCTGCTCAGCCCCACCCCACCCTGCCCTGCCCCACCCCACCTCACTTTCCTTATGGTTCACCAACTCTGTGCTTGGCTGGCGCTTTGACTGAGCATCCACCTCTCACACTGTCGACGTGAGTTCAGATCCCGACTTTGGCTGCACAGTTACCATGCTCCTCTCCCACCCTCCCTTACTTCCTCAAACCCTTAAATAAAAACCTGCATACCCTCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577233.1 True 603 lncRNA 0.50 2 24763427 24764691

Neighbor

gene id symbol gene type direction distance location
rtn4a LOC108271908 coding upstream 174896 24575681 ~ 24588531 (+)
LOC113538193 NA coding upstream 192808 24568575 ~ 24570619 (+)
LOC113538433 LOC108271906 coding upstream 195752 24558933 ~ 24567675 (+)
rgs4 LOC108272266 coding upstream 923837 23836334 ~ 23839590 (+)
il12rb2 LOC108271892 coding upstream 1211483 23533178 ~ 23551944 (+)
LOC113538142 LOC108271661 coding downstream 1025273 25789964 ~ 25793678 (+)
LOC113538280 LOC108273248,LOC108436444,LOC103352837,LOC104926284 coding downstream 1056193 25820884 ~ 25840241 (+)
caskb LOC108273092,LOC106956946,LOC103475843,LOC108249344,LOC101469939,LOC108412427,LOC103147095 coding downstream 1091172 25855863 ~ 25969370 (+)
abcc4 abcc4,LOC107659955,LOC107678162 coding downstream 1229241 25993932 ~ 26050958 (+)
sox21a sox21 coding downstream 1292351 26057042 ~ 26060367 (+)
LOC117596090 NA non-coding upstream 113144 24649018 ~ 24650283 (+)
G32795 brinp3a.2,LOC108440126,LOC108271609,LOC107711116,LOC107732449 non-coding upstream 428972 24334199 ~ 24334455 (+)
G32782 NA non-coding upstream 503050 24259993 ~ 24260377 (+)
G32662 NA non-coding upstream 818967 23944239 ~ 23944460 (+)
LOC113538279 NA non-coding upstream 1096494 23662954 ~ 23666933 (+)
G33148 NA non-coding downstream 483155 25247846 ~ 25250585 (+)
G33192 NA non-coding downstream 808091 25572782 ~ 25573315 (+)
LOC117596059 NA non-coding downstream 816256 25580947 ~ 25635159 (+)
G33205 NA non-coding downstream 894086 25658777 ~ 25659262 (+)
G33250 NA non-coding downstream 934722 25699413 ~ 25699740 (+)
LOC117598985 NA other upstream 107179 24652990 ~ 24656248 (+)
G32684 NA other upstream 742391 24020378 ~ 24021036 (+)
uhmk1 uhmk1,LOC107692420 other upstream 1109872 23633606 ~ 23653555 (+)
tmem69 tmem69 other upstream 2159991 22597595 ~ 22603436 (+)
insl5a insl5 other upstream 3745560 21014838 ~ 21017867 (+)
trak2 LOC108271640 other downstream 992123 25756814 ~ 25784890 (+)
agap1 agap1,LOC108272907,LOC103044997,LOC107586321,LOC107688827,LOC107709574 other downstream 1500806 26265497 ~ 26408396 (+)
st6gal2b LOC108273345,LOC108272416,LOC107559918,LOC108437696,LOC107748583,LOC107688887,LOC103032506 other downstream 1848959 26613650 ~ 26649387 (+)
adam23a adam23,LOC107705602,LOC107748557,LOC107688856,LOC107660086 other downstream 3005105 27769796 ~ 27787602 (+)
ten1 ten1 other downstream 3214106 27978797 ~ 27983171 (+)

Expression


Co-expression Network