LOC117596148


Basic Information

Item Value
gene id LOC117596148
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 19383314 ~ 19385251 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577309.1
TAAAGAAGAGGTGGCTGTTATCAAGCAGCTGTTGTTATCATTGACAAATCTCACCTCTCCAGCTGCTGTAATGCCAGAGGGCATACGTTTGCCACTGAGCTACTTGCAGGACCTCGAAATGGTCGAAAATAGGCTTAAGGAGGCCTGTTACAGTGAAATGGCAAAGTATCTGGCAACAGGGTCCCAACCCATCCGCCAACACAAGACGCATTCTTGTCCGCTTGCTCACCACCCCACTGGCCCAGCAATTGTGCTGGCGGGGCTCTGGCCAGAGGATGGCTTTTGGGGATGTGCTGGTCTGCAGAGCAGTCATAGATGCTGTGACAAAAAGCAGCCAGGCCACAGCACCCAAAGTGGAAGCTTCAGTTAAAACATGGCTCTGCAATGTTAGAGACTGGGATGGGGGAAGGAGCAGAAGGACCAGAAGATAGATAGCAGATATCCACCGGTGCCCCTGAGTAAAAGGCAAGAAATCATGCCATCTCTGCTGCAGCCTAGCATCATCATTATAACCAGTGGACTATAGTATTAACAGAAAatagtttgtagatttaaaacCGATATAAGATTTTTCTTTCCTGATTATACAggtaaatttaaataaaagttttatgtaCTCATATTTTGGATACCTCCTAATAATTTTCAGCCATGAATATACATTATTTAGTTCTCATGAGCTTCTCTATTGCAATCTGTTGTTTGATATAAAGAATTTAAATGTGGATTTCAATATAGGCTTAACATATACAGGGTGTCctaaaagtcaggaaccaatgggaatatgttgatccaaatatgttgagcaaaatctgcaaaaatatGACACAGTGGCTGAGGAAATGCTTAGAGTGCAAGGGGGAACAATtagagcatatgttgtaaataataaatacaaaatgaata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577309.1 True 906 lncRNA 0.42 3 19383314 19385251

Neighbor

gene id symbol gene type direction distance location
trnap-ugg_1 NA coding downstream 2802 19380441 ~ 19380512 (-)
im:7152348 NA coding downstream 7150 19372430 ~ 19376164 (-)
zgc:103559 LOC108272278,LOC108427664,LOC107696750,LOC107752646,LOC107552265,LOC105898261,LOC107733245 coding downstream 406377 18970308 ~ 18976937 (-)
agxta agxt,agxta,LOC108427662,LOC107552266,LOC107696749 coding downstream 413863 18964291 ~ 18969451 (-)
dtymk dtymk,LOC107694123,LOC107593168,LOC107696762,LOC107552279 coding downstream 421643 18957773 ~ 18961671 (-)
bcl6aa bcl6 coding upstream 158901 19544152 ~ 19552693 (-)
tbc1d23 tbc1d23,LOC107574489 coding upstream 571466 19956717 ~ 19983297 (-)
tomm70a tomm70 coding upstream 600773 19986024 ~ 19999160 (-)
gfi1ab LOC108271917 coding upstream 640603 20025854 ~ 20032781 (-)
evi5b evi5,LOC108427692 coding upstream 653699 20038950 ~ 20101198 (-)
G29793 NA non-coding downstream 124136 19258950 ~ 19259178 (-)
G29678 NA non-coding downstream 333579 18984062 ~ 19049735 (-)
G29614 farp2 non-coding downstream 487509 18890717 ~ 18895805 (-)
G29612 NA non-coding downstream 496303 18883984 ~ 18887011 (-)
G29551 NA non-coding downstream 748957 18634078 ~ 18634357 (-)
trnap-cgg_1 NA non-coding upstream 1191 19386442 ~ 19386513 (-)
G29905 NA non-coding upstream 19157 19404408 ~ 19404621 (-)
G30062 NA non-coding upstream 152670 19537921 ~ 19540054 (-)
G30059 NA non-coding upstream 167927 19553178 ~ 19555762 (-)
G30070 NA non-coding upstream 181032 19566283 ~ 19566511 (-)
trnap-ugg NA other downstream 566116 18817127 ~ 18817198 (-)
LOC113537624 NA other downstream 566502 18794025 ~ 18816812 (-)
trnag-ucc NA other downstream 566984 18816259 ~ 18816330 (-)
zgc:153916 LOC108271870,LOC108413223,LOC107749976 other downstream 1187686 18148228 ~ 18195628 (-)
G29279 NA other downstream 1310405 18070987 ~ 18072909 (-)
glmnb LOC108272089 other upstream 618108 20003359 ~ 20014094 (-)
pex5la pex5l,pex5la,LOC107709207 other upstream 974471 20359722 ~ 20429325 (-)
lepr lepr other upstream 1896113 21281364 ~ 21317823 (-)
raver2 raver2 other upstream 2064295 21449546 ~ 21531428 (-)
ccdc17 ccdc17 other upstream 3187181 22572432 ~ 22581943 (-)

Expression


Co-expression Network