LOC113545973


Basic Information

Item Value
gene id LOC113545973
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 3215614 ~ 3218711 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577414.1
cagagacagtaacagGGTGTAACAGAACAGGAGCTTTAATATCTTTCTGAAGTGGAGTTGGTGTGAATATCTGTGAGTGTGAACTCAGGATGAAGATCCTCCTCATCTTTACCCTCTGCCTGATCTCAGTGAAGATTTTGAAATGCATTTCTTTACCTATCAGCTGCAGTGTTACATGAAGGAAGGTTTTGCTCAGATGGATATTTTGTGTCTGGCTAGATGGAGGAGCCTCCAAGGAAGTAACTGGATATTCTGGATAAATTCAGGAAGATTCTCACTGTTTAATGAGACCAAATCAGCAGAGTTCTGGGTGATGATCAGAGAGCTCACTGTACAGGACACTGGGACGTAGCAGTGTGGAGTTTATAAAGATTTGGggataaacatttacacaccagTGGAACTGAAGGTAAAGAAAGTTACTGCCAAAGTCAAcaaatttactaaaaaaatactGCACACCAAAGTGACACAAACTTCCAGAGAGaCAAATGGAGATTATCAAAATGACCCAAATGTGCTTCTTCTCCaatcaacacaaacaccaatcgTTTGTGTTAGAGGTAAAGTTAGAGGTTCTATCACTTCCAGTTTCaatgtattttaatgcatatttcCTTTGTGTGTAATCATATGCAGTTCTTATTACACCGATGTGGTGTTGTGGATTTTACTGGAGAAAAAATTGCACCAAGAGCTGCTATACTTTACTTCTTTCTTCTGGTCAAAGTTACAGACTTACATCTTTGGAAGTACTTCTCTTgataatgaaaggaaaaaatataattatagttTAGTACAATTACACTGTAAATTTCAGATCCTTGGCCAGTGCTTAGAGATGATGGCCTAGGCATGACAGATGAAGTTAGTCTGAGGCTCAAATGGCTGCTGTCTGATCTAAATAGTAGAGCAAACGTTGGgcacaaaaaaagaacactttTCAGACTCGATTTCATGGAGCTCAGCAATGTCAGTGATTGATTTACAAACCTGGGTGACATGATCCTGGGCAGAAATCTATGTGTGCTGCCAGACAAGGTCATCCCAAAGTCATTTGGCCACCAAAGCATTTAAGGTGAGCTTATTGCCTGAACATGCAGTTCTCCCACTTTTTGCTAGCTAAAGTGACCGCTATTAAAAGACAGCTTTCAGACACACCCATTTCAGTTTGGCATCTTGCATAGTCTCAAAGTGTTCTGATTCACCAACATGAAGTTCTGTGGCTTTATGTTTTGAATGAAGGGAAGTcagataagtaagaaataacccacaacaggacatgctgttagaggaaaataatcaataatggggTGATGATGCAAAGTGCAGTCATTCATACCACCATGAAGATTAGTATTTTCCTATgtcagcattttttaaagtatttaattcttttataccacaacaactttccaaacatttacagttttttaaatttattacagaacaacacatcataccttttatctctttatatagtagttacatttaataataatagtatccatttatagttacttttattaATAAGATGATTGTTTGGATTCCTTCCTGGATTCCCATTATTTGTAgatagaaaatatatttttgcacataCGCAAGtcaacacacatttacaaatttgcaaTGCCAAGTATGACACTTTGAATTCATTTCAAAGtgtctctgttttattttgctcaCATGCTTCACACATAAATTTGCTGTCAAAAGCTTTCTCACACAGCCAGAAGGGGAAGTGCATGTTGCTTCAGTTTCTGGtagttcatgcattcatgacctccagactggactattgtaatgcattgctaggtggttgtgctgcatcttcaataaacaagctgcagttagtccagaatgcagccgccagagttcttactaggtcaagaaaagatgatcacataaccccaatattatcatccctgcactggctacctgttaaGTTTAGAACTGATTACAAACTAGCACTACTTACGTACaaggctctaaatggtttagctcccacgtatctagccagtcttctaacacatcacaatccaccacgctccttaagatctcaaaactccagacttctggtagttcctagaatatcaaagtct
>XR_004577417.1
GGAAGTGGACATTGCACAATGTAATGCGgcacagagacagtaacagGGTGTAACAGAACAGGAGCTTTAATATCTTTCTGAAGTGGAGTTGGTGTGAATATCTATGGAGGAGCCTCCAAGGAAGTAACTGGATATTCTGGATAAATTCAGGAAGATTCTCACTGTTTAATGAGACCAAATCAGCAGAGTTCTGGGTGATGATCAGAGAGCTCACTGTACAGGACACTGGGACGTAGCAGTGTGGAGTTTATAAAGATTTGGggataaacatttacacaccagTGGAACTGAAGGTAAAGAAAGTTACTGCCAAAGTCAAcaaatttactaaaaaaatactGCACACCAAAGTGACACAAACTTCCAGAGAGaCAAATGGAGATTATCAAAATGACCCAAATGTGCTTCTTCTCCaatcaacacaaacaccaatcgTTTGTGTTAGAGGTAAAGTTAGAGGTTCTATCACTTCCAGTTTCaatgtattttaatgcatatttcCTTTGTGTGTAATCATATGCAGTTCTTATTACACCGATGTGGTGTTGTGGATTTTACTGGAGAAAAAATTGCACCAAGAGCTGCTATACTTTACTTCTTTCTTCTGGTCAAAGTTACAGACTTACATCTTTGGAAGTACTTCTCTTgataatgaaaggaaaaaatataattatagttTAGTACAATTACACTGTAAATTTCAGATCCTTGGCCAGTGCTTAGAGATGATGGCCTAGGCATGACAGATGAAGTTAGTCTGAGGCTCAAATGGCTGCTGTCTGATCTAAATAGTAGAGCAAACGTTGGgcacaaaaaaagaacactttTCAGACTCGATTTCATGGAGCTCAGCAATGTCAGTGATTGATTTACAAACCTGGGTGACATGATCCTGGGCAGAAATCTATGTGTGCTGCCAGACAAGGTCATCCCAAAGTCATTTGGCCACCAAAGCATTTAAGGTGAGCTTATTGCCTGAACATGCAGTTCTCCCACTTTTTGCTAGCTAAAGTGACCGCTATTAAAAGACAGCTTTCAGACACACCCATTTCAGTTTGGCATCTTGCATAGTCTCAAAGTGTTCTGATTCACCAACATGAAGTTCTGTGGCTTTATGTTTTGAATGAAGGGAAGTcagataagtaagaaataacccacaacaggacatgctgttagaggaaaataatcaataatggggTGATGATGCAAAGTGCAGTCATTCATACCACCATGAAGATTAGTATTTTCCTATgtcagcattttttaaagtatttaattcttttataccacaacaactttccaaacatttacagttttttaaatttattacagaacaacacatcataccttttatctctttatatagtagttacatttaataataatagtatccatttatagttacttttattaATAAGATGATTGTTTGGATTCCTTCCTGGATTCCCATTATTTGTAgatagaaaatatatttttgcacataCGCAAGtcaacacacatttacaaatttgcaaTGCCAAGTATGACACTTTGAATTCATTTCAAAGtgtctctgttttattttgctcaCATGCTTCACACATAAATTTGCTGTCAAAAGCTTTCTCACACAGCCAGAAGGGGAAGTGCATGTTGCTTCAGTTTCTGGtagttcatgcattcatgacctccagactggactattgtaatgcattgctaggtggttgtgctgcatcttcaataaacaagctgcagttagtccagaatgcagccgccagagttcttactaggtcaagaaaagatgatcacataaccccaatattatcatccctgcactggctacctgttaaGTTTAGAACTGATTACAAACTAGCACTACTTACGTACaaggctctaaatggtttagctcccacgtatctagccagtcttctaacacatcacaatccaccacgctccttaagatctcaaaactccagacttctggtagttcctagaatatcaaagtct
>XR_004577419.1
cagagacagtaacagGGTGTAACAGAACAGGAGCTTTAATATCTTTCTGAAGTGGAGTTGGTGTGAATATCTCTGCAGTGTTACATGAAGGAAGGTTTTGCTCAGATGGATATTTTGTGTCTGGCTAGATGGAGGAGCCTCCAAGGAAGTAACTGGATATTCTGGATAAATTCAGGAAGATTCTCACTGTTTAATGAGACCAAATCAGCAGAGTTCTGGGTGATGATCAGAGAGCTCACTGTACAGGACACTGGGACGTAGCAGTGTGGAGTTTATAAAGATTTGGggataaacatttacacaccagTGGAACTGAAGGTAAAGAAAGTTACTGCCAAAGTCAAcaaatttactaaaaaaatactGCACACCAAAGTGACACAAACTTCCAGAGAGaCAAATGGAGATTATCAAAATGACCCAAATGTGCTTCTTCTCCaatcaacacaaacaccaatcgTTTGTGTTAGAGGTAAAGTTAGAGGTTCTATCACTTCCAGTTTCaatgtattttaatgcatatttcCTTTGTGTGTAATCATATGCAGTTCTTATTACACCGATGTGGTGTTGTGGATTTTACTGGAGAAAAAATTGCACCAAGAGCTGCTATACTTTACTTCTTTCTTCTGGTCAAAGTTACAGACTTACATCTTTGGAAGTACTTCTCTTgataatgaaaggaaaaaatataattatagttTAGTACAATTACACTGTAAATTTCAGATCCTTGGCCAGTGCTTAGAGATGATGGCCTAGGCATGACAGATGAAGTTAGTCTGAGGCTCAAATGGCTGCTGTCTGATCTAAATAGTAGAGCAAACGTTGGgcacaaaaaaagaacactttTCAGACTCGATTTCATGGAGCTCAGCAATGTCAGTGATTGATTTACAAACCTGGGTGACATGATCCTGGGCAGAAATCTATGTGTGCTGCCAGACAAGGTCATCCCAAAGTCATTTGGCCACCAAAGCATTTAAGGTGAGCTTATTGCCTGAACATGCAGTTCTCCCACTTTTTGCTAGCTAAAGTGACCGCTATTAAAAGACAGCTTTCAGACACACCCATTTCAGTTTGGCATCTTGCATAGTCTCAAAGTGTTCTGATTCACCAACATGAAGTTCTGTGGCTTTATGTTTTGAATGAAGGGAAGTcagataagtaagaaataacccacaacaggacatgctgttagaggaaaataatcaataatggggTGATGATGCAAAGTGCAGTCATTCATACCACCATGAAGATTAGTATTTTCCTATgtcagcattttttaaagtatttaattcttttataccacaacaactttccaaacatttacagttttttaaatttattacagaacaacacatcataccttttatctctttatatagtagttacatttaataataatagtatccatttatagttacttttattaATAAGATGATTGTTTGGATTCCTTCCTGGATTCCCATTATTTGTAgatagaaaatatatttttgcacataCGCAAGtcaacacacatttacaaatttgcaaTGCCAAGTATGACACTTTGAATTCATTTCAAAGtgtctctgttttattttgctcaCATGCTTCACACATAAATTTGCTGTCAAAAGCTTTCTCACACAGCCAGAAGGGGAAGTGCATGTTGCTTCAGTTTCTGGtagttcatgcattcatgacctccagactggactattgtaatgcattgctaggtggttgtgctgcatcttcaataaacaagctgcagttagtccagaatgcagccgccagagttcttactaggtcaagaaaagatgatcacataaccccaatattatcatccctgcactggctacctgttaaGTTTAGAACTGATTACAAACTAGCACTACTTACGTACaaggctctaaatggtttagctcccacgtatctagccagtcttctaacacatcacaatccaccacgctccttaagatctcaaaactccagacttctggtagttcctagaatatcaaagtct

Function

GO:

id name namespace
GO:0008519 ammonium transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577414.1 True 2102 lncRNA 0.38 3 3215645 3218711
XR_004577417.1 False 1986 lncRNA 0.38 4 3215614 3218711
XR_004577419.1 False 2011 lncRNA 0.38 4 3215645 3218711

Neighbor

gene id symbol gene type direction distance location
LOC113545949 LOC108271656 coding upstream 34225 3168038 ~ 3181389 (+)
ppig ppig coding upstream 49865 3152768 ~ 3165749 (+)
klhl41b LOC108271921,LOC103025159,LOC108438036,LOC107672655,LOC107557135,LOC107686793,LOC107582363,LOC107746633 coding upstream 63908 3144893 ~ 3151706 (+)
col28a2b LOC108271920,LOC108438056,LOC103354592,LOC103389749,LOC101477258,LOC102210360 coding upstream 74025 3100344 ~ 3141589 (+)
si:dkey-197j19.6 LOC108271935 coding upstream 121984 3085052 ~ 3093630 (+)
LOC113545972 LOC108272174,LOC108271666,LOC108262055,LOC108271668 coding downstream 629 3219340 ~ 3224174 (+)
phospho2 phospho2 coding downstream 11011 3229722 ~ 3232728 (+)
ssb ssb coding downstream 14828 3233539 ~ 3241973 (+)
erich2 LOC108271660 coding downstream 65177 3283888 ~ 3294512 (+)
gad1b gad1b,LOC108271649,LOC108438042,LOC107746600,LOC107686757,LOC107582324 coding downstream 78603 3297314 ~ 3337934 (+)
G20856 NA non-coding upstream 4683 3210461 ~ 3210931 (+)
G20848 NA non-coding upstream 63100 3152314 ~ 3152514 (+)
G20807 NA non-coding upstream 263736 2951677 ~ 2951878 (+)
G20802 NA non-coding upstream 266768 2948610 ~ 2948846 (+)
G20401 NA non-coding upstream 847396 2366609 ~ 2368218 (+)
G20868 NA non-coding downstream 113051 3331762 ~ 3353685 (+)
LOC117599318 NA non-coding downstream 161180 3379891 ~ 3382596 (+)
G21136 NA non-coding downstream 430620 3649331 ~ 3651978 (+)
G21138 NA non-coding downstream 435040 3653751 ~ 3653967 (+)
G21168 NA non-coding downstream 448034 3666745 ~ 3666972 (+)
LOC113545950 NA other upstream 22153 3182307 ~ 3193461 (+)
sec61a1 sec61a1,LOC107384934,LOC103358725,LOC102228108,LOC106518493 other upstream 151587 3053331 ~ 3064027 (+)
trnaf-gaa_12 NA other upstream 225133 2990409 ~ 2990481 (+)
trnaf-gaa_11 NA other upstream 226739 2988803 ~ 2988875 (+)
trnaf-gaa_10 NA other upstream 229181 2986218 ~ 2986433 (+)
gorasp2 gorasp2,LOC103354349,LOC105930246 other downstream 121735 3340446 ~ 3367287 (+)
LOC117599944 LOC108271666,LOC108271667,LOC108271668,LOC108262055 other downstream 331514 3550225 ~ 3578308 (+)
LOC117599945 LOC108272174,LOC108262055 other downstream 361037 3579748 ~ 3587643 (+)
LOC113545962 NA other downstream 509941 3728652 ~ 3742306 (+)
slc32a1 slc32a1,LOC108272428,LOC108436412 other downstream 1056362 4275073 ~ 4327860 (+)

Expression


Co-expression Network