LOC117596284


Basic Information

Item Value
gene id LOC117596284
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 4447367 ~ 4447479 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577457.1
ACAAGCCGCTCTCTTCATTCACACATAAATCTTTCcccttttactaaagatttctgtgGAGAGGAACATTGATGAGTTCTACTTatgtttgtgggctttgctgttGCAAAGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577457.1 True 113 ncRNA 0.40 1 4447367 4447479

Neighbor

gene id symbol gene type direction distance location
prelid3b prelid3b,LOC107749404,LOC107556737,LOC103464385 coding downstream 82196 4359120 ~ 4365171 (-)
cldn10a cldn10a,LOC108272592,LOC108436398,LOC107551926,LOC107581434,LOC107659956,LOC107706622 coding downstream 408083 4034071 ~ 4039284 (-)
si:busm1-52i16.2 LOC108272376 coding downstream 421389 4023790 ~ 4025978 (-)
si:ch211-181l5.2 LOC108273231 coding downstream 438790 4004622 ~ 4008577 (-)
stx16 stx16,LOC107708146,LOC107685804,LOC107554194 coding downstream 488548 3938000 ~ 3958819 (-)
LOC117596286 NA coding upstream 10857 4458336 ~ 4458447 (-)
LOC113545959 NA coding upstream 28373 4475852 ~ 4483914 (-)
igfbp2a LOC108273244,LOC108438161 coding upstream 142905 4590384 ~ 4618467 (-)
inha inha,LOC107586362 coding upstream 269931 4717410 ~ 4719627 (-)
nufip1 nufip1 coding upstream 763017 5210496 ~ 5219287 (-)
G21554 NA non-coding downstream 1152 4445803 ~ 4446215 (-)
G21552 rabl3 non-coding downstream 3917 4442856 ~ 4443450 (-)
G21546 NA non-coding downstream 18026 4427193 ~ 4429341 (-)
G21486 NA non-coding downstream 93052 4354099 ~ 4354315 (-)
G21441 NA non-coding downstream 175338 4271809 ~ 4272029 (-)
G21555 NA non-coding upstream 2983 4450462 ~ 4450778 (-)
G21557 NA non-coding upstream 13452 4460931 ~ 4462016 (-)
G21592 NA non-coding upstream 92748 4540227 ~ 4546709 (-)
LOC113545826 NA non-coding upstream 103092 4550571 ~ 4569672 (-)
G21693 NA non-coding upstream 252345 4699824 ~ 4700057 (-)
trnaf-gaa_14 NA other downstream 115196 4332099 ~ 4332171 (-)
G21434 NA other downstream 190280 4256668 ~ 4257087 (-)
rab22a rab22a,LOC107554197,LOC106517659,LOC108231697 other downstream 669379 3750018 ~ 3777988 (-)
npepl1 npepl1,LOC107666140,LOC107554193 other downstream 710481 3715807 ~ 3736886 (-)
tlk1b LOC108271645,LOC108438044,LOC107557139,LOC107746598 other downstream 1076213 3348308 ~ 3371154 (-)
obsl1a obsl1 other upstream 365796 4813275 ~ 4902011 (-)
LOC113530384 LOC108272961,LOC108436439,LOC107750822,LOC107703119 other upstream 663983 5111462 ~ 5201212 (-)
LOC113533127 NA other upstream 958488 5405967 ~ 5414086 (-)
romo1 romo1,LOC102788570 other upstream 1084558 5532037 ~ 5536060 (-)
blcap blcap,bc10 other upstream 1509160 5956639 ~ 5965183 (-)

Expression


Co-expression Network