LOC117596286


Basic Information

Item Value
gene id LOC117596286
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 4458336 ~ 4458447 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577458.1
CCACtctcttcattcattcacacataaaTCTTTAaccttttactaaagatttctgtgGAGAGGAACATTGATGAGTTCTACTTatgtttgtgggctttgctgttCCAAAGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577458.1 True 112 ncRNA 0.37 1 4458336 4458447

Neighbor

gene id symbol gene type direction distance location
LOC117596284 NA coding downstream 10857 4447367 ~ 4447479 (-)
prelid3b prelid3b,LOC107749404,LOC107556737,LOC103464385 coding downstream 93165 4359120 ~ 4365171 (-)
cldn10a cldn10a,LOC108272592,LOC108436398,LOC107551926,LOC107581434,LOC107659956,LOC107706622 coding downstream 419052 4034071 ~ 4039284 (-)
si:busm1-52i16.2 LOC108272376 coding downstream 432358 4023790 ~ 4025978 (-)
si:ch211-181l5.2 LOC108273231 coding downstream 449759 4004622 ~ 4008577 (-)
LOC113545959 NA coding upstream 17405 4475852 ~ 4483914 (-)
igfbp2a LOC108273244,LOC108438161 coding upstream 131937 4590384 ~ 4618467 (-)
inha inha,LOC107586362 coding upstream 258963 4717410 ~ 4719627 (-)
nufip1 nufip1 coding upstream 752049 5210496 ~ 5219287 (-)
bin1b bin1b,LOC108272731,LOC108436425 coding upstream 806465 5264912 ~ 5324988 (-)
G21555 NA non-coding downstream 7558 4450462 ~ 4450778 (-)
G21554 NA non-coding downstream 12121 4445803 ~ 4446215 (-)
G21552 rabl3 non-coding downstream 14886 4442856 ~ 4443450 (-)
G21546 NA non-coding downstream 28995 4427193 ~ 4429341 (-)
G21486 NA non-coding downstream 104021 4354099 ~ 4354315 (-)
G21557 NA non-coding upstream 2484 4460931 ~ 4462016 (-)
G21592 NA non-coding upstream 81780 4540227 ~ 4546709 (-)
LOC113545826 NA non-coding upstream 92124 4550571 ~ 4569672 (-)
G21693 NA non-coding upstream 241377 4699824 ~ 4700057 (-)
LOC113545947 NA non-coding upstream 305462 4763909 ~ 4765538 (-)
trnaf-gaa_14 NA other downstream 126165 4332099 ~ 4332171 (-)
G21434 NA other downstream 201249 4256668 ~ 4257087 (-)
rab22a rab22a,LOC107554197,LOC106517659,LOC108231697 other downstream 680348 3750018 ~ 3777988 (-)
npepl1 npepl1,LOC107666140,LOC107554193 other downstream 721450 3715807 ~ 3736886 (-)
tlk1b LOC108271645,LOC108438044,LOC107557139,LOC107746598 other downstream 1087182 3348308 ~ 3371154 (-)
obsl1a obsl1 other upstream 354828 4813275 ~ 4902011 (-)
LOC113530384 LOC108272961,LOC108436439,LOC107750822,LOC107703119 other upstream 653015 5111462 ~ 5201212 (-)
LOC113533127 NA other upstream 947520 5405967 ~ 5414086 (-)
romo1 romo1,LOC102788570 other upstream 1073590 5532037 ~ 5536060 (-)
blcap blcap,bc10 other upstream 1498192 5956639 ~ 5965183 (-)

Expression


Co-expression Network