LOC117599142


Basic Information

Item Value
gene id LOC117599142
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20197220 ~ 20199516 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579569.1
ATCCGCCCCATATATCCTTTACGCTGCGTGGCCACGCCCACCGATCGTTCTAATAAGTCACCTTTAAAGTAGGAGGCCCGAAACTGGCCAATCACAGGCTGGCTTGTGTTTGCGTAACAAAATCGTGTACGAGGGTCGAACTCAAGCTGGTCGTACGGGCGCGTGGAGTCGCCGCGCGCGCGTATAGCTTCAGTAGCGTCGGCTAAACATTACAGGGATATAAAGTTATATGTATGTGGGTCATACGTGTAGAAACGTTACACTCACGTTTAATAGAGAGTTGTTTTCTCTCCTTCCATTATAAATGACATGTGTCGTGTGTAGATTTATTACAGCAGAGCGCTAACAGGGCTTATGTTTCTTTCACACTGACCAGTATTGGATGAATGGGTTCCAGTGAGCAAGGCACTGTTCCTGTGGTTGCTAACATTTCACtactgaatgtatttattattaaggaCTGGGTTTTACTTGCCCAGATGGCGCTGTGATGCAAAATGACAATTCAAGGCATTTCCAGCAATCATCCCATGTCTTCCcatatagttttaattttttaaaatagtgtaTATACTGTTGCCATGTAATGTGTGTTCAGGGTATGTGGTGCTCTTGATCTACTCCTGCTACTGAGTCTGTTCCAGTGATCTCTGCTCCACTCAAGggcacgagggTTCACTATATGGtctgatgaggatgaaaatgatgtaaatcatactATGCTTCACTCATTGGATCTTAACCCAGTTGAACAcctgtgggagattttggagcgatGTTAGACAGCtaaccaccatcatcaacacaccAATTAAGAGgatatcttttggaaaaattGTGTTCAACCCTCCAGTACTCTGAAACTGTTCTAAAACTACCAAAGCttactgaagctgttctgatgACTCATGGTGATCTATCACCTTACAAagactttatgttgtttttccatttaatttctatattaaatatgcatatttatccatatatgtacatataagtGCATGTGTTTTAGGAAGTATTGTTTTAATACCTAGAGATTCTGCATTTAATGAGTCAAAATAAATTTCTGTGGAAGATCATAATAAACAGTGATATTAAATCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579569.1 True 1105 lncRNA 0.40 2 20197220 20199516

Neighbor

gene id symbol gene type direction distance location
dpt dpt coding downstream 13926 20172128 ~ 20183294 (-)
zbtb11 zbtb11,LOC106576566 coding downstream 41061 20146385 ~ 20156159 (-)
dipk1ab fam69a,LOC108272054,LOC108427695,LOC103026455,LOC107590645,LOC107659006,LOC107566484 coding downstream 54963 20112945 ~ 20142257 (-)
evi5b evi5,LOC108427692 coding downstream 96022 20038950 ~ 20101198 (-)
gfi1ab LOC108271917 coding downstream 164439 20025854 ~ 20032781 (-)
nme7 nme7,LOC107659027,LOC107731836,LOC107732015,LOC107692347,LOC107590639 coding upstream 8239 20207755 ~ 20246008 (-)
LOC113534100 bivm,LOC107548643,LOC104949108 coding upstream 50599 20250115 ~ 20258553 (-)
tmem131 tmem131,LOC107659030 coding upstream 65797 20265313 ~ 20310226 (-)
mrpl47 mrpl47 coding upstream 125342 20324858 ~ 20328459 (-)
lrrc7 lrrc7,LOC107709201 coding upstream 484031 20683547 ~ 20814820 (-)
G30320 NA non-coding downstream 84702 20104252 ~ 20112518 (-)
G30270 NA non-coding downstream 211301 19984675 ~ 19985919 (-)
G30255 NA non-coding downstream 273241 19923763 ~ 19923979 (-)
G30246 NA non-coding downstream 283269 19913653 ~ 19913951 (-)
G30236 NA non-coding downstream 310482 19885468 ~ 19886738 (-)
G30412 NA non-coding upstream 17 20199533 ~ 20207732 (-)
G30421 NA non-coding upstream 47089 20246605 ~ 20246871 (-)
G30422 NA non-coding upstream 47595 20247111 ~ 20247337 (-)
G30423 NA non-coding upstream 48650 20248166 ~ 20248509 (-)
G30428 NA non-coding upstream 115322 20314838 ~ 20315511 (-)
glmnb LOC108272089 other downstream 183126 20003359 ~ 20014094 (-)
trnap-ugg NA other downstream 1380022 18817127 ~ 18817198 (-)
LOC113537624 NA other downstream 1380408 18794025 ~ 18816812 (-)
trnag-ucc NA other downstream 1380890 18816259 ~ 18816330 (-)
zgc:153916 LOC108271870,LOC108413223,LOC107749976 other downstream 2001592 18148228 ~ 18195628 (-)
pex5la pex5l,pex5la,LOC107709207 other upstream 160206 20359722 ~ 20429325 (-)
lepr lepr other upstream 1081848 21281364 ~ 21317823 (-)
raver2 raver2 other upstream 1250030 21449546 ~ 21531428 (-)
ccdc17 ccdc17 other upstream 2372916 22572432 ~ 22581943 (-)
gpbp1l1 gpbp1l1,LOC107731630,LOC107551044,LOC107725200 other upstream 2382787 22582303 ~ 22593861 (-)

Expression


Co-expression Network