LOC117599151


Basic Information

Item Value
gene id LOC117599151
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 11668819 ~ 11688224 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579590.1
TCTTCCCATTGGTCCAAGATCCAGAGCTGCTACCGATATACCACACACAGCGTCTCATATAAAAGGCAGCTTCTCCCCTTCTCTCCCAGCTTCTCTGTTCCACCCCTGCACAGCAGAGCGGAGAAGAGGAAAGACAACAGAAGTATGAGGAGAGGAGGATGAGCAAAGTCATTCTGCAGATATGTACTGAAAACACACTGGAAACTGCAAATGTATATTGCAAATACAGAGCCTAGTTGGACATTGACCCACCAGCTGGCAGTCATTTCCACATAGAGAGCCCTCACTGGACAGAGACCTGGCCTGGGCTCATTTTCATCATCCGGTCGATAGGTATATTGGTATACCGCAGCGTCATCATATTTGGACTCCACGATCATGTCAGGCACATCAGTCTTCACAATGCTATGCTGCGAGTTAAAATAGACCATGGAGAGTGGACGTCTCTGGATGGGAACACAGC

Function

GO:

id name namespace
GO:0038003 opioid receptor signaling pathway biological_process
GO:0038023 signaling receptor activity molecular_function
GO:0060089 molecular transducer activity molecular_function
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579590.1 True 463 lncRNA 0.48 3 11668819 11688224

Neighbor

gene id symbol gene type direction distance location
arhgap9 arhgap9 coding upstream 89688 11536329 ~ 11579131 (+)
ddit3 ddit3 coding upstream 147909 11517494 ~ 11520910 (+)
dctn2 dctn2,LOC107558166 coding upstream 168303 11486737 ~ 11500516 (+)
LOC117595871 NA coding upstream 212729 11452072 ~ 11456090 (+)
igsf8 igsf8,LOC108431823 coding upstream 249379 11408776 ~ 11419440 (+)
LOC113526407 r3hdm2 coding downstream 7407 11695631 ~ 11753218 (+)
LOC113534407 stac3 coding downstream 66339 11754563 ~ 11760603 (+)
LOC113547077 nxph4,LOC107556734,LOC107758187,LOC107676147,LOC107735585 coding downstream 144483 11832707 ~ 11892740 (+)
shmt2 shmt2,LOC107758195,LOC103359782 coding downstream 213994 11902218 ~ 11937563 (+)
h6pd h6pd coding downstream 332022 12020246 ~ 12026634 (+)
G25434 NA non-coding upstream 5725 11662230 ~ 11663094 (+)
G25422 gli1 non-coding upstream 45750 11619169 ~ 11623069 (+)
G25410 NA non-coding upstream 83176 11585407 ~ 11585643 (+)
G25408 NA non-coding upstream 88789 11579738 ~ 11580030 (+)
G25387 NA non-coding upstream 183453 11484801 ~ 11485366 (+)
G25452 NA non-coding downstream 44200 11732424 ~ 11792125 (+)
LOC113534932 NA non-coding downstream 115366 11803590 ~ 11805459 (+)
G25624 LOC108271795 non-coding downstream 257869 11946093 ~ 12038014 (+)
LOC113533008 NA non-coding downstream 269004 11957228 ~ 11974989 (+)
G25872 NA non-coding downstream 586628 12274852 ~ 12275052 (+)
G25029 NA other upstream 760247 10906200 ~ 10908572 (+)
G24500 NA other upstream 1470364 10197966 ~ 10198455 (+)
manbal manbal other upstream 1727632 9938365 ~ 9941187 (+)
LOC113530691 LOC108410934,LOC108272263,LOC107696444,LOC107587591,LOC107744363 other upstream 1745654 9874708 ~ 9923165 (+)
LOC113532547 LOC108271588 other upstream 2065313 9591941 ~ 9603506 (+)
si:dkeyp-67f1.2 fam3d,LOC108272267 other downstream 516217 12204441 ~ 12213657 (+)
G25908 LOC108272198 other downstream 837946 12526170 ~ 12527491 (+)
si:ch211-286o17.1 NA other downstream 1040769 12728993 ~ 12751277 (+)
si:dkey-238f9.1 si:dkey-238f9.1,LOC108271548,LOC103034279,LOC108427543,LOC107567673,LOC107729782,LOC107666167,LOC106582736 other downstream 1577564 13265788 ~ 13332177 (+)
tshba tshb,LOC108271948 other downstream 1801937 13490161 ~ 13506004 (+)

Expression


Co-expression Network