LOC117599240


Basic Information

Item Value
gene id LOC117599240
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 22164936 ~ 22165852 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579707.1
TCAGGTTCAGTTTTAgcctcagcttcagcttcagATTCAGTTTCAGCGTCAGCTTTTGCCTCAGCTTCATCCTCaggttcagcttcagcttcaatttCAGCCTCAACTTCAGCATCAGTGTGAGCATCAGTTACAAGTTCAGCTTCAGCGTCAGCTTTAGCCTCAGCTTCAGCCTTATctccttctgaaaaaaaaatcacattattcataattaaaaCTAGATATAATGTTTAGATTGTATTAATTGAggcaaataaaatgtttcatttcaattcctaatttaatttaatatcagcaATATTCTCCAGTTACATTACTGccatcatgatatgatattaataataataataccttctTTGTTGGCCTGGAactttttgtaatttatctTCCTTCCTTTGCCTCGTGTCCCTCTCCTGgtccatttctttttctcctttccaTTCCCGCTGTTTTCAACAGTCTTCTCTGTCTTATTGCCGTTTACTACATCATTTGAAAATGATGTATAATATCACAatcataatattatataatattattattgccacttgtatttaattttcataattacaaATTCACtcataatgttttaaaaatcacttaTAGTCTCATCCAGTTTAACATCCATTAACCATACTGCAGTCTcagcttttatttgtttgtttgtttgagtagTTGTTTGGAGGGattgtgtgaaatttattttatagttaaagggATATATCAGTGGTagtgaaaatttaaaatgtctgaACTTTAGTTTTAAAGATTATTTCCAACATTTTAGCATCTTGTTAAGAATATAGGGGTAGTACACAtgcagtattatttttattaatatgagCTACCTGTGTTAATTACCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579707.1 True 863 lncRNA 0.32 2 22164936 22165852

Neighbor

gene id symbol gene type direction distance location
LOC117599931 LOC108271599 coding upstream 45304 22109948 ~ 22119632 (+)
kank4 kank4 coding upstream 63831 22048516 ~ 22101105 (+)
dock7 dock7 coding upstream 130846 21969974 ~ 22034090 (+)
si:dkey-148h10.5 NA coding upstream 369427 21783792 ~ 21795509 (+)
jak1 jak1,LOC107739023,LOC107556544,LOC107659055 coding upstream 716853 21408754 ~ 21448083 (+)
cyldl LOC108271977 coding downstream 226976 22392828 ~ 22406479 (+)
ghrhrb ghrhrb,LOC108271568,LOC103030126,LOC108440237,LOC106560417,LOC107692395,LOC107556991,LOC107731650,LOC107704523 coding downstream 261068 22426920 ~ 22474562 (+)
akr1a1b akr1a1,LOC107731642,LOC107725198 coding downstream 386964 22552816 ~ 22560612 (+)
nasp nasp,LOC107594614,LOC107692404 coding downstream 397387 22563239 ~ 22570318 (+)
mast2 mast2 coding downstream 439129 22604981 ~ 22727448 (+)
G31693 NA non-coding upstream 16466 22148198 ~ 22148470 (+)
G31567 NA non-coding upstream 333997 21830726 ~ 21830939 (+)
G31565 NA non-coding upstream 338201 21826498 ~ 21826735 (+)
LOC117599889 NA non-coding upstream 522586 21636184 ~ 21642350 (+)
G31384 NA non-coding upstream 552058 21609233 ~ 21612878 (+)
G31704 NA non-coding downstream 16352 22182204 ~ 22188503 (+)
LOC117599245 NA non-coding downstream 54530 22220382 ~ 22221526 (+)
LOC117599246 NA non-coding downstream 61363 22227215 ~ 22231015 (+)
G31744 mafa,mafaa,LOC107556987,LOC107591187 non-coding downstream 151831 22317683 ~ 22322046 (+)
G31760 NA non-coding downstream 159269 22325121 ~ 22325337 (+)
insl5a insl5 other upstream 1147069 21014838 ~ 21017867 (+)
dlg1 dlg1,LOC108271975,LOC108427717,LOC107738730 other upstream 1506856 20536973 ~ 20658080 (+)
LOC113543059 c11h1orf146 other upstream 2144710 20000046 ~ 20020226 (+)
smx5 lsm2,LSM2,smx5 other upstream 2627739 19534345 ~ 19537197 (+)
LOC113533886 espnl other upstream 3077725 19061097 ~ 19087211 (+)
tmem69 tmem69 other downstream 431743 22597595 ~ 22603436 (+)
uhmk1 uhmk1,LOC107692420 other downstream 1467754 23633606 ~ 23653555 (+)
G32684 NA other downstream 1854526 24020378 ~ 24021036 (+)
LOC117598985 NA other downstream 2487138 24652990 ~ 24656248 (+)
trak2 LOC108271640 other downstream 3590962 25756814 ~ 25784890 (+)

Expression


Co-expression Network