LOC117599242


Basic Information

Item Value
gene id LOC117599242
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 22196594 ~ 22197668 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579710.1
CCTGAGGCTGAAGCTGAGGCTAAAACTGAACCTGAGGCTGAAGCTGAGGCTAAAACTGAACCTGAAGCTGAACCTGAGGCTGAAGCCGTTGCTGAAGAAAGAAAGCCAgaagacacagaaacagagaacaGCACATCTCTGGATGGAGCAAAAGGCAACAATGCAGACCAGCCAGCCGAAAGCATCAGGAAAGGAAACGAGAAAAAGAAATGGACCAGGAGAGGAACACGAGGCAGAGGGAGAAAGATCAATTACGAAAAATTACAGGCCAACAAAGcagAAGAAGATAAGGCTGAAGCTGTTGCTGAAGCAGAGACTAAAGTTGAGGCTGAAGTAGATGCTAAAGATGAGGTTGAAGCTGAGGCTGACCCTGAAGAAAAAAAGCCAGAAGGTGCTGAAACAGAGAACAGCACATTCCTGGTAAACGGCAATAAGACGGAGAAGACTGTTGAAAACAGTGGGAatggaaatgagaaaaagaaaaggaccaGGAGAGGGACACgaggaaaaggaaggaagataaattacaaaaagtTCCAGGCCAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579710.1 True 547 lncRNA 0.46 4 22196594 22197668

Neighbor

gene id symbol gene type direction distance location
LOC113538524 NA coding downstream 46356 22144203 ~ 22150238 (-)
usp1 usp1 coding downstream 150136 22035213 ~ 22046458 (-)
angptl3 angptl3 coding downstream 199873 21993695 ~ 21996721 (-)
atg4c atg4c coding downstream 228385 21957535 ~ 21968209 (-)
foxd3 foxd3,foxd1 coding downstream 371120 21822742 ~ 21825474 (-)
mafaa mafa,mafaa,LOC107556987,LOC107591187 coding upstream 121467 22319135 ~ 22322050 (-)
zc3h3 zc3h3 coding upstream 129787 22327455 ~ 22390555 (-)
LOC117599264 zc3h3 coding upstream 192585 22390253 ~ 22392793 (-)
adcyap1r1b adcyap1r1b,LOC108271541,LOC108441855,LOC107731652,LOC107717143,LOC107692394 coding upstream 286424 22484092 ~ 22514058 (-)
LOC113538473 NA coding upstream 349586 22547254 ~ 22552299 (-)
LOC117599244 NA non-coding downstream 20854 22173351 ~ 22175740 (-)
LOC117596032 NA non-coding downstream 63896 22130425 ~ 22132698 (-)
G31681 NA non-coding downstream 92183 22104198 ~ 22104411 (-)
G31492 NA non-coding downstream 580919 21615321 ~ 21615675 (-)
G31491 NA non-coding downstream 587427 21607396 ~ 21609167 (-)
G31742 NA non-coding upstream 26717 22224385 ~ 22226660 (-)
G31755 NA non-coding upstream 118138 22315806 ~ 22316006 (-)
G31916 NA non-coding upstream 340655 22538323 ~ 22560608 (-)
G31934 NA non-coding upstream 367624 22565292 ~ 22568836 (-)
G32157 NA non-coding upstream 513545 22711213 ~ 22785690 (-)
raver2 raver2 other downstream 665166 21449546 ~ 21531428 (-)
lepr lepr other downstream 878771 21281364 ~ 21317823 (-)
pex5la pex5l,pex5la,LOC107709207 other downstream 1767269 20359722 ~ 20429325 (-)
glmnb LOC108272089 other downstream 2182500 20003359 ~ 20014094 (-)
trnap-ugg NA other downstream 3379396 18817127 ~ 18817198 (-)
ccdc17 ccdc17 other upstream 374764 22572432 ~ 22581943 (-)
gpbp1l1 gpbp1l1,LOC107731630,LOC107551044,LOC107725200 other upstream 384635 22582303 ~ 22593861 (-)
dmrt2b LOC108271504 other upstream 1024625 23222293 ~ 23225548 (-)
uap1 uap1,LOC107724142,LOC107551035 other upstream 1417786 23615454 ~ 23632013 (-)
nbeal1 nbeal1 other upstream 3482422 25680090 ~ 25738817 (-)

Expression


Co-expression Network