LOC117599318


Basic Information

Item Value
gene id LOC117599318
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 3379891 ~ 3382596 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579770.1
CTCATATCCTCATTAACATACAGGTACACTCCGTAACACTCCATACTGTACTCATATCCTCATTAACATGCAGGTACACTCCGTAACACTCCATACTGTACTCATATCCTCATTAACATACAGGTACACTCCGTAACACTCCATACTGTACTCATATCCTCATTAACATACAGGTACACTCCATAACACTCCATACTGTACTCATATCCTCATGAACATACAGGTACACTCCGTAACACTCCATACTGTACTCATATCCTCATTAACATACAGGTAAACTCCGTAACACTCCATACTGTACTCATATCCTCATTAACATACAGGTACACTCCATAACACTCCATACTGTACTCATATCCTCATGAACATACAGGTAAACTCCATAACACTCCATACTGCACTCATATCCTCATTAACATACAGGTACACTCCGTAACACTCCATACTGTACTCATATTCTCACTAACATACAGGTAAACTCCATAACACTCCATACTGTACTCATATCCTCATTAACATACAGGTAAACTCCGTAACACTCCATACTGTACTCATATCCTCATTAACATACAGGTACACTCCGTAACACTCCATACTGTACTCATATCCTCATTAACATACAGGTAAACTCCGTAACACTCCATACTGTACTCATATTCTCACTAACATACAGGTAAACTCCGTAACACTCCATACTGTACTCATATCCTCAGTAACATACAGGTACACTCCGTAACACTCCATACTGTACTCATATCCTCATTAACATACAGGTAAACTCCATAACACTCCATACTGCACTCATATCCTCATTAACATACAGGTACACTCCGTAACACTCCATACTGTACTCATATCCTCATTAACATACAGGTACACTCCATAACACTCCATACTGTACTCATATCCTCATTAACATACAGGTACACTCTGTAACACTCCATACTGTACTCATATCCTCATTAACATACAGGTACACTCCATAACACTCCATACTGTACTCATATCCTCATTAACATACAGGTACAATCCATAACACTCCATACTGTACTCATATCCTCATTAACATACAGGTACACTCCGTAACACTCCATACTGTACTCATATCCTCATTAACATACAGGTACACTCCGTAACACTCCATACTGTACTCATATCCTCATTAACATACAGGTACACTCCATAACACTCCATACTGCACtcatattgttattaatatacaGTTGCACTCCGTAACACTCCATACTGTACTCATATCCTCATTAACATACAGGTACACTCCGTAACACTCCATACTGTACTCATATCCTCATTAACATACAGGTAAACTCCGTAACACTCCATACTGTACTCATATCCTCATTAACATACAGGTAAACTCCGTAACACTCCATACTGTACTCATATCCTCATTAACATACAGGTACACTCTGTAACACTCCATACTGTACTCATATCCTCATTAACATACAGGTAAACTCCGTAACACTCCATACTGTACTCATATCCTCATTAACATACAGGTACACTCCGTAACACTCCATACTGTACTCATATCCTCATTAACATACAGGTACACTCCGTAACACTCCATACTGTACTCATATCCTCATTAACATACAGGTACAATCCATAACACTCCATACTGTACTCATATCCTCATTAACATACAGGTACACTCCGTAACACTCCATACTGCACtcatattgttattaatatacaGGTACACTCCGTAACACTCCATACTGTACTCATATCCTCATTAACATACAGGTACACTCCGTAACACTCCATACTGTACTCATATCCTCAGTAACATACAGGTACACTCCATAACACTCCATACTGCACtcatattgttattaatatacaGTTGCACTCCGTAACACTGATactaatgttttatataaaatatactatattcATATCATTATTAACATACAGGTATGACCTCTAtttgtgtcagtcccagtaaaaggaggtgtggtctcggTTTCcatcccagtaaaggaggcatggccaTCAAACTCctgtgaaagaggcgtggcctctgatcatgtcagtcccagtaaaggacaTGTGGTGTTTGTGTCTATCAactccagtgaaggaggcgtggcctttgtattTGCAGTCTCAGTGAAAGTGTGACCTCCATTcatgtcagtcccagtgaaagaaggcgtggcctctgtacctgtcagtcccagtgaaggtggcgtggcctctgtac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579770.1 True 2233 lncRNA 0.40 3 3379891 3382596

Neighbor

gene id symbol gene type direction distance location
gad1b gad1b,LOC108271649,LOC108438042,LOC107746600,LOC107686757,LOC107582324 coding upstream 41957 3297314 ~ 3337934 (+)
erich2 LOC108271660 coding upstream 85379 3283888 ~ 3294512 (+)
ssb ssb coding upstream 137918 3233539 ~ 3241973 (+)
phospho2 phospho2 coding upstream 147163 3229722 ~ 3232728 (+)
LOC113545972 LOC108272174,LOC108271666,LOC108262055,LOC108271668 coding upstream 155717 3219340 ~ 3224174 (+)
sema5bb LOC108271639,LOC108430840 coding downstream 65554 3448150 ~ 3515083 (+)
LOC113545865 NA coding downstream 158213 3540809 ~ 3544535 (+)
LOC113545866 LOC108271638,LOC108272174,LOC108271666,LOC108271667,LOC108262055,LOC108271668 coding downstream 206471 3589067 ~ 3613541 (+)
fam210b fam210b,LOC102797503,LOC106566122 coding downstream 251500 3634096 ~ 3649254 (+)
aamp aamp,LOC107750832 coding downstream 284680 3667276 ~ 3681466 (+)
G20868 NA non-coding upstream 26206 3331762 ~ 3353685 (+)
LOC113545973 NA non-coding upstream 161180 3215614 ~ 3218711 (+)
G20856 NA non-coding upstream 168960 3210461 ~ 3210931 (+)
G20848 NA non-coding upstream 227377 3152314 ~ 3152514 (+)
G20807 NA non-coding upstream 428013 2951677 ~ 2951878 (+)
G21136 NA non-coding downstream 266735 3649331 ~ 3651978 (+)
G21138 NA non-coding downstream 271155 3653751 ~ 3653967 (+)
G21168 NA non-coding downstream 284149 3666745 ~ 3666972 (+)
G21178 NA non-coding downstream 299385 3681981 ~ 3682254 (+)
G21197 NA non-coding downstream 330711 3713307 ~ 3714991 (+)
gorasp2 gorasp2,LOC103354349,LOC105930246 other upstream 12604 3340446 ~ 3367287 (+)
LOC113545950 NA other upstream 186430 3182307 ~ 3193461 (+)
sec61a1 sec61a1,LOC107384934,LOC103358725,LOC102228108,LOC106518493 other upstream 315864 3053331 ~ 3064027 (+)
trnaf-gaa_12 NA other upstream 389410 2990409 ~ 2990481 (+)
trnaf-gaa_11 NA other upstream 391016 2988803 ~ 2988875 (+)
LOC117599944 LOC108271666,LOC108271667,LOC108271668,LOC108262055 other downstream 167629 3550225 ~ 3578308 (+)
LOC117599945 LOC108272174,LOC108262055 other downstream 197152 3579748 ~ 3587643 (+)
LOC113545962 NA other downstream 346056 3728652 ~ 3742306 (+)
slc32a1 slc32a1,LOC108272428,LOC108436412 other downstream 892477 4275073 ~ 4327860 (+)
trnah-gug_1 NA other downstream 969081 4351677 ~ 4351748 (+)

Expression


Co-expression Network