LOC117599372


Basic Information

Item Value
gene id LOC117599372
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 7341309 ~ 7343059 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579836.1
GCCAGGCCGAACAAACCTGACATTGTTCTTGGTACTGCCTAGAGGACAACTTCCCCTCCCTCCTCgtctctctcaccatctctgTGCCTTTGTGTCCCTCTTCTCCATGGTTCACAACGAAGTACCCATGAGTGTTTACATGCAGTTCCCCTTGACACATTAACAACCTCTAAATTGATTCCAGATCTTGGTTTATAGACTTTCCATTGGCAGACTTGATCACAGATGGCACTCCCTGTGATTATGGCAACAACCATTATGTGATCAGCTTTCCTGATTGGCATCCTCACCAAAGGTCTTGGGCAAACACACATCACTTGTCACGATAAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579836.1 True 332 lncRNA 0.46 3 7341309 7343059

Neighbor

gene id symbol gene type direction distance location
si:dkey-43k4.5 LOC108435666,LOC108271680,LOC103374879,LOC102299656,LOC101482251 coding upstream 613760 6717205 ~ 6727549 (+)
LOC113526859 NA coding upstream 625785 6714595 ~ 6715524 (+)
LOC113526867 NA coding upstream 646504 6693864 ~ 6694805 (+)
LOC113526877 LOC108271619 coding upstream 652074 6688294 ~ 6689235 (+)
LOC113526885 LOC108271621,LOC108435693,LOC103036533 coding upstream 658529 6681011 ~ 6682780 (+)
cntn3b cntn3b,LOC108271503,LOC107555980,LOC107599411,LOC107666965 coding downstream 114391 7457450 ~ 7527601 (+)
pdzrn3b pdzrn3,pdzrn3b,LOC107584480,LOC107667029,LOC107680714,LOC107599412,LOC107713474 coding downstream 316151 7659210 ~ 7751695 (+)
shq1 shq1 coding downstream 479193 7822252 ~ 7882992 (+)
prok2 prok2,LOC107732044,LOC107584519,LOC107666985,LOC107599435 coding downstream 639836 7982895 ~ 7987854 (+)
foxp1b foxp1b,foxp1,LOC108424105,LOC107584474 coding downstream 663330 8006389 ~ 8170892 (+)
G22931 NA non-coding upstream 297527 7043575 ~ 7043782 (+)
G22765 NA non-coding upstream 540519 6800076 ~ 6800790 (+)
G22683 NA non-coding upstream 689916 6651105 ~ 6651393 (+)
G22673 NA non-coding upstream 717860 6623243 ~ 6623449 (+)
G22621 NA non-coding upstream 783308 6557791 ~ 6558001 (+)
G23258 NA non-coding downstream 309972 7653031 ~ 7653288 (+)
G23263 NA non-coding downstream 322975 7666034 ~ 7706729 (+)
G23257 NA non-coding downstream 356952 7700011 ~ 7771468 (+)
G23269 NA non-coding downstream 363752 7706811 ~ 7708693 (+)
G23271 NA non-coding downstream 370771 7713830 ~ 7714740 (+)
zc3h10 zc3h10,LOC108412311,LOC106583159 other upstream 1114148 6215947 ~ 6227161 (+)
abraa LOC107578753 other upstream 1291404 6036714 ~ 6049905 (+)
tmem74b NA other upstream 1365307 5968198 ~ 5976002 (+)
rbl1 rbl1,LOC107723925,LOC107666117,LOC107596834,LOC107708126 other upstream 1584621 5717530 ~ 5756688 (+)
atp5f1e NA other upstream 1838078 5501645 ~ 5503231 (+)
rybpb rybp,LOC108272260,LOC107599415,LOC107680715,LOC107732045,LOC107713516,LOC107584476 other downstream 562539 7905598 ~ 7930557 (+)
lrrn1 lrrn1,LOC107713505,LOC107667032,LOC107584468,LOC107680720 other downstream 1064746 8407805 ~ 8439341 (+)
cysltr3 LOC108271499 other downstream 1653875 8996934 ~ 9004941 (+)
hmga1b NA other downstream 2107866 9450925 ~ 9454462 (+)
LOC113532547 LOC108271588 other downstream 2248882 9591941 ~ 9603506 (+)

Expression


Co-expression Network