Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC117599889 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047596.1 |
| NCBI id | CM018542.1 |
| chromosome length | 35203048 |
| location | 21636184 ~ 21642350 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_004580201.1 | True | 284 | lncRNA | 0.50 | 3 | 21636184 | 21642350 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| jak1 | jak1,LOC107739023,LOC107556544,LOC107659055 | coding | upstream | 188101 | 21408754 ~ 21448083 (+) |
| wdr78 | wdr78 | coding | upstream | 624454 | 20999483 ~ 21011730 (+) |
| ttc22 | ttc22 | coding | upstream | 647317 | 20982532 ~ 20988867 (+) |
| wwc3 | wwc3 | coding | upstream | 687547 | 20894023 ~ 20948637 (+) |
| cldn34a | cldn34 | coding | upstream | 755717 | 20876945 ~ 20880467 (+) |
| si:dkey-148h10.5 | NA | coding | downstream | 141442 | 21783792 ~ 21795509 (+) |
| dock7 | dock7 | coding | downstream | 327624 | 21969974 ~ 22034090 (+) |
| kank4 | kank4 | coding | downstream | 406166 | 22048516 ~ 22101105 (+) |
| LOC117599931 | LOC108271599 | coding | downstream | 467598 | 22109948 ~ 22119632 (+) |
| cyldl | LOC108271977 | coding | downstream | 750478 | 22392828 ~ 22406479 (+) |
| G31384 | NA | non-coding | upstream | 23306 | 21609233 ~ 21612878 (+) |
| LOC113526220 | NA | non-coding | upstream | 229798 | 21402242 ~ 21406386 (+) |
| G31260 | NA | non-coding | upstream | 250842 | 21385006 ~ 21385342 (+) |
| G30791 | NA | non-coding | upstream | 542368 | 21093614 ~ 21093816 (+) |
| G30747 | NA | non-coding | upstream | 672543 | 20963432 ~ 20963641 (+) |
| G31565 | NA | non-coding | downstream | 184148 | 21826498 ~ 21826735 (+) |
| G31567 | NA | non-coding | downstream | 188376 | 21830726 ~ 21830939 (+) |
| G31693 | NA | non-coding | downstream | 505848 | 22148198 ~ 22148470 (+) |
| LOC117599240 | NA | non-coding | downstream | 522586 | 22164936 ~ 22165852 (+) |
| G31704 | NA | non-coding | downstream | 539854 | 22182204 ~ 22188503 (+) |
| insl5a | insl5 | other | upstream | 618317 | 21014838 ~ 21017867 (+) |
| dlg1 | dlg1,LOC108271975,LOC108427717,LOC107738730 | other | upstream | 978104 | 20536973 ~ 20658080 (+) |
| LOC113543059 | c11h1orf146 | other | upstream | 1615958 | 20000046 ~ 20020226 (+) |
| smx5 | lsm2,LSM2,smx5 | other | upstream | 2098987 | 19534345 ~ 19537197 (+) |
| LOC113533886 | espnl | other | upstream | 2548973 | 19061097 ~ 19087211 (+) |
| tmem69 | tmem69 | other | downstream | 955245 | 22597595 ~ 22603436 (+) |
| uhmk1 | uhmk1,LOC107692420 | other | downstream | 1991256 | 23633606 ~ 23653555 (+) |
| G32684 | NA | other | downstream | 2378028 | 24020378 ~ 24021036 (+) |
| LOC117598985 | NA | other | downstream | 3010640 | 24652990 ~ 24656248 (+) |
| trak2 | LOC108271640 | other | downstream | 4114464 | 25756814 ~ 25784890 (+) |
