trnae-cuc_6


Basic Information

Item Value
gene id trnae-cuc_6
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 18577224 ~ 18577295 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnae-cuc_6
TCCCTGGAGGTCTAGTGGTTatgccacagcgctctcaccgctgcggcccgggttcaattcctggccagggaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnae-cuc_6 True 72 tRNA 0.63 1 18577224 18577295

Neighbor

gene id symbol gene type direction distance location
lmo4b lmo4,lmo4b,LOC103026253,LOC107593176 coding downstream 112653 18449257 ~ 18464571 (-)
lrrc8c lrrc8c,LOC108272152,LOC108413226,LOC103030093,LOC107749978,LOC107593158,LOC107698887 coding downstream 450312 18116405 ~ 18126912 (-)
lrrc8db lrrc8db,LOC108272026,LOC108413222,LOC107730703,LOC107749977,LOC107564626,LOC107675437 coding downstream 470945 18094167 ~ 18106279 (-)
znf326 znf326 coding downstream 486908 18083721 ~ 18090316 (-)
LOC117599332 NA coding downstream 781873 17794638 ~ 17795351 (-)
LOC113534471 LOC108271530,LOC108427638 coding upstream 38682 18615977 ~ 18623608 (-)
sox14 sox14,LOC103365676,LOC100695210 coding upstream 111303 18688598 ~ 18691082 (-)
hdlbpa hdlbp coding upstream 242762 18820057 ~ 18835789 (-)
stk25a stk25,stk25a,LOC108427658,LOC107733254,LOC107593165,LOC107694119 coding upstream 339330 18916625 ~ 18927201 (-)
dtymk dtymk,LOC107694123,LOC107593168,LOC107696762,LOC107552279 coding upstream 380478 18957773 ~ 18961671 (-)
G29439 NA non-coding downstream 124248 18452468 ~ 18452976 (-)
G29237 NA non-coding downstream 734404 17784475 ~ 17842820 (-)
G29223 NA non-coding downstream 862859 17700761 ~ 17714365 (-)
G29213 NA non-coding downstream 939207 17637327 ~ 17638017 (-)
G29196 NA non-coding downstream 1065769 17487361 ~ 17511455 (-)
G29541 NA non-coding upstream 37062 18614357 ~ 18614724 (-)
G29542 NA non-coding upstream 37574 18614869 ~ 18615874 (-)
G29551 NA non-coding upstream 56783 18634078 ~ 18634357 (-)
G29612 NA non-coding upstream 306689 18883984 ~ 18887011 (-)
G29614 farp2 non-coding upstream 313422 18890717 ~ 18895805 (-)
zgc:153916 LOC108271870,LOC108413223,LOC107749976 other downstream 381596 18148228 ~ 18195628 (-)
G29279 NA other downstream 504315 18070987 ~ 18072909 (-)
G29263 NA other downstream 627506 17949157 ~ 17949718 (-)
si:dkey-44g17.6 LOC108271932,LOC107705318,LOC103038496,LOC107564436,LOC107555383,LOC105895117,LOC107678346 other downstream 1047909 17472330 ~ 17529315 (-)
G29158 NA other downstream 1297051 17272955 ~ 17280173 (-)
LOC113537624 NA other upstream 216730 18794025 ~ 18816812 (-)
trnag-ucc NA other upstream 238964 18816259 ~ 18816330 (-)
trnap-ugg NA other upstream 239832 18817127 ~ 18817198 (-)
glmnb LOC108272089 other upstream 1426064 20003359 ~ 20014094 (-)
pex5la pex5l,pex5la,LOC107709207 other upstream 1782427 20359722 ~ 20429325 (-)

Expression


Co-expression Network