trnaf-gaa_12


Basic Information

Item Value
gene id trnaf-gaa_12
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 2990409 ~ 2990481 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnaf-gaa_12
GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTaaaggtccctggttcgatcccgGGTTTCGGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnaf-gaa_12 True 73 tRNA 0.53 1 2990409 2990481

Neighbor

gene id symbol gene type direction distance location
trnaf-gaa_9 NA coding upstream 5814 2984523 ~ 2984595 (+)
trnaf-gaa_8 NA coding upstream 8193 2982144 ~ 2982216 (+)
trnaf-gaa_7 NA coding upstream 10780 2979557 ~ 2979629 (+)
trnaf-gaa_6 NA coding upstream 12400 2977937 ~ 2978009 (+)
trnaf-gaa_5 NA coding upstream 14138 2976199 ~ 2976271 (+)
ip6k2b LOC108272042,LOC108440711,LOC103024783,LOC107585112,LOC107748392,LOC107582690,LOC107711042,LOC107673575,LOC107667389 coding downstream 29947 3020428 ~ 3027059 (+)
uroc1 uroc1 coding downstream 77907 3068388 ~ 3084335 (+)
si:dkey-197j19.6 LOC108271935 coding downstream 94571 3085052 ~ 3093630 (+)
col28a2b LOC108271920,LOC108438056,LOC103354592,LOC103389749,LOC101477258,LOC102210360 coding downstream 109863 3100344 ~ 3141589 (+)
klhl41b LOC108271921,LOC103025159,LOC108438036,LOC107672655,LOC107557135,LOC107686793,LOC107582363,LOC107746633 coding downstream 154412 3144893 ~ 3151706 (+)
G20807 NA non-coding upstream 38531 2951677 ~ 2951878 (+)
G20802 NA non-coding upstream 41563 2948610 ~ 2948846 (+)
G20401 NA non-coding upstream 622191 2366609 ~ 2368218 (+)
G20372 chd1l non-coding upstream 659525 2329407 ~ 2330884 (+)
G20208 ptger3,LOC107582843 non-coding upstream 1015888 1970279 ~ 1974521 (+)
G20848 NA non-coding downstream 161833 3152314 ~ 3152514 (+)
G20856 NA non-coding downstream 219980 3210461 ~ 3210931 (+)
LOC113545973 NA non-coding downstream 225133 3215614 ~ 3218711 (+)
G20868 NA non-coding downstream 341281 3331762 ~ 3353685 (+)
LOC117599318 NA non-coding downstream 389410 3379891 ~ 3382596 (+)
trnaf-gaa_11 NA other upstream 1534 2988803 ~ 2988875 (+)
trnaf-gaa_10 NA other upstream 3976 2986218 ~ 2986433 (+)
col7a1 col7a1 other upstream 43553 2832153 ~ 2946856 (+)
vhl vhl other upstream 252416 2734112 ~ 2737993 (+)
opa1 opa1,LOC107585173,LOC107722677,LOC107582739,LOC107711112,LOC107673572 other upstream 537720 2386699 ~ 2452689 (+)
sec61a1 sec61a1,LOC107384934,LOC103358725,LOC102228108,LOC106518493 other downstream 62850 3053331 ~ 3064027 (+)
LOC113545950 NA other downstream 191826 3182307 ~ 3193461 (+)
gorasp2 gorasp2,LOC103354349,LOC105930246 other downstream 349965 3340446 ~ 3367287 (+)
LOC117599944 LOC108271666,LOC108271667,LOC108271668,LOC108262055 other downstream 559744 3550225 ~ 3578308 (+)
LOC117599945 LOC108272174,LOC108262055 other downstream 589267 3579748 ~ 3587643 (+)

Expression


Co-expression Network