trnaf-gaa_13


Basic Information

Item Value
gene id trnaf-gaa_13
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 3037284 ~ 3037356 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnaf-gaa_13
GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTaaaggtccctggttcgatcccgGGTTTCGGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnaf-gaa_13 True 73 tRNA 0.53 1 3037284 3037356

Neighbor

gene id symbol gene type direction distance location
slc4a8 LOC108271813,LOC108440675,LOC107711038,LOC107667363,LOC107673578 coding downstream 233679 2759853 ~ 2803605 (-)
ghrl LOC108272045,LOC100329224,LOC100304469 coding downstream 295513 2738445 ~ 2741771 (-)
zgc:152986 LOC108271810 coding downstream 315941 2717897 ~ 2721343 (-)
LOC113545857 LOC108261604,LOC108271807 coding downstream 321617 2702380 ~ 2715667 (-)
LOC113545965 LOC108271807,LOC108261604 coding downstream 336932 2688030 ~ 2700352 (-)
tatdn2 tatdn2,LOC107667383,LOC107582679,LOC107748398,LOC107585107 coding upstream 6651 3044007 ~ 3052277 (-)
slc25a12 slc25a12,LOC108271646,LOC108430860,LOC107686753,LOC107582326 coding upstream 356620 3393976 ~ 3415402 (-)
unc50 unc50,LOC107672653,LOC107686789,LOC107746628 coding upstream 389966 3427322 ~ 3435211 (-)
LOC113545819 LOC108271666 coding upstream 493428 3530784 ~ 3538021 (-)
ctsz ctsz,LOC107729770,LOC107596856,LOC107708086,LOC107666025 coding upstream 667518 3704874 ~ 3711757 (-)
G20801 NA non-coding downstream 88883 2948178 ~ 2948401 (-)
G20675 ccdc174,LOC107711012,LOC107673461,LOC107585200 non-coding downstream 290192 2745608 ~ 2747092 (-)
G20644 NA non-coding downstream 374654 2662312 ~ 2662630 (-)
G20643 NA non-coding downstream 375579 2661434 ~ 2661705 (-)
G20567 NA non-coding downstream 486737 2550346 ~ 2550547 (-)
G20920 NA non-coding upstream 25894 3063250 ~ 3064519 (-)
G20942 NA non-coding upstream 48248 3085604 ~ 3085949 (-)
G20945 NA non-coding upstream 55319 3092675 ~ 3093630 (-)
G20951 NA non-coding upstream 118971 3156327 ~ 3165752 (-)
G20991 NA non-coding upstream 173153 3210509 ~ 3210931 (-)
LOC113545802 NA other downstream 403604 2604654 ~ 2633680 (-)
slc9a7 slc9a7,LOC107711095,LOC107673530,LOC107753405 other downstream 1214616 1756160 ~ 1822668 (-)
slc48a1b LOC108271834,LOC107585148,LOC108441111,LOC107733581,LOC107711080,LOC103044934,LOC107685336 other downstream 1999688 1028827 ~ 1037596 (-)
LOC113545844 LOC108272247 other downstream 2423896 594565 ~ 613388 (-)
LOC117595947 LOC108272222 other downstream 2469764 546880 ~ 567520 (-)
tlk1b LOC108271645,LOC108438044,LOC107557139,LOC107746598 other upstream 310952 3348308 ~ 3371154 (-)
npepl1 npepl1,LOC107666140,LOC107554193 other upstream 678451 3715807 ~ 3736886 (-)
rab22a rab22a,LOC107554197,LOC106517659,LOC108231697 other upstream 712662 3750018 ~ 3777988 (-)
G21434 NA other upstream 1219312 4256668 ~ 4257087 (-)
trnaf-gaa_14 NA other upstream 1294743 4332099 ~ 4332171 (-)

Expression


Co-expression Network