trnaf-gaa_14


Basic Information

Item Value
gene id trnaf-gaa_14
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 4332099 ~ 4332171 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnaf-gaa_14
GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTaaaggtccctggttcaatcccgGGTTTCGGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnaf-gaa_14 True 73 tRNA 0.52 1 4332099 4332171

Neighbor

gene id symbol gene type direction distance location
cldn10a cldn10a,LOC108272592,LOC108436398,LOC107551926,LOC107581434,LOC107659956,LOC107706622 coding downstream 292815 4034071 ~ 4039284 (-)
si:busm1-52i16.2 LOC108272376 coding downstream 306121 4023790 ~ 4025978 (-)
si:ch211-181l5.2 LOC108273231 coding downstream 323522 4004622 ~ 4008577 (-)
stx16 stx16,LOC107708146,LOC107685804,LOC107554194 coding downstream 373280 3938000 ~ 3958819 (-)
tubb1 tubb1,LOC107685846,LOC107554186,LOC107666034,LOC107729746 coding downstream 486375 3839963 ~ 3845724 (-)
prelid3b prelid3b,LOC107749404,LOC107556737,LOC103464385 coding upstream 26949 4359120 ~ 4365171 (-)
LOC117596284 NA coding upstream 115196 4447367 ~ 4447479 (-)
LOC117596286 NA coding upstream 126165 4458336 ~ 4458447 (-)
LOC113545959 NA coding upstream 143681 4475852 ~ 4483914 (-)
igfbp2a LOC108273244,LOC108438161 coding upstream 258213 4590384 ~ 4618467 (-)
G21441 NA non-coding downstream 60070 4271809 ~ 4272029 (-)
LOC113545816 NA non-coding downstream 76737 4245757 ~ 4255362 (-)
G21413 NA non-coding downstream 87663 4169002 ~ 4244436 (-)
G21422 NA non-coding downstream 100004 4192003 ~ 4232095 (-)
G21417 NA non-coding downstream 178203 4146736 ~ 4153896 (-)
G21486 NA non-coding upstream 21928 4354099 ~ 4354315 (-)
G21546 NA non-coding upstream 95022 4427193 ~ 4429341 (-)
G21552 rabl3 non-coding upstream 110685 4442856 ~ 4443450 (-)
G21554 NA non-coding upstream 113632 4445803 ~ 4446215 (-)
G21555 NA non-coding upstream 118291 4450462 ~ 4450778 (-)
G21434 NA other downstream 75012 4256668 ~ 4257087 (-)
rab22a rab22a,LOC107554197,LOC106517659,LOC108231697 other downstream 554111 3750018 ~ 3777988 (-)
npepl1 npepl1,LOC107666140,LOC107554193 other downstream 595213 3715807 ~ 3736886 (-)
tlk1b LOC108271645,LOC108438044,LOC107557139,LOC107746598 other downstream 960945 3348308 ~ 3371154 (-)
LOC113545802 NA other downstream 1698419 2604654 ~ 2633680 (-)
obsl1a obsl1 other upstream 481104 4813275 ~ 4902011 (-)
LOC113530384 LOC108272961,LOC108436439,LOC107750822,LOC107703119 other upstream 779291 5111462 ~ 5201212 (-)
LOC113533127 NA other upstream 1073796 5405967 ~ 5414086 (-)
romo1 romo1,LOC102788570 other upstream 1199866 5532037 ~ 5536060 (-)
blcap blcap,bc10 other upstream 1624468 5956639 ~ 5965183 (-)

Expression


Co-expression Network