trnap-ugg


Basic Information

Item Value
gene id trnap-ugg
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 18817127 ~ 18817198 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnap-ugg
GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCC

Function

NR:

description
PREDICTED: serine/threonine-protein kinase Nek3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnap-ugg True 72 tRNA 0.61 1 18817127 18817198

Neighbor

gene id symbol gene type direction distance location
sox14 sox14,LOC103365676,LOC100695210 coding downstream 126045 18688598 ~ 18691082 (-)
LOC113534471 LOC108271530,LOC108427638 coding downstream 193519 18615977 ~ 18623608 (-)
hs2st1b hs2st1b,LOC108271533,LOC108427652,LOC107694133,LOC107679861,LOC107557741,LOC106560611 coding downstream 230901 18501538 ~ 18586226 (-)
trnae-cuc_6 NA coding downstream 239832 18577224 ~ 18577295 (-)
lmo4b lmo4,lmo4b,LOC103026253,LOC107593176 coding downstream 352556 18449257 ~ 18464571 (-)
hdlbpa hdlbp coding upstream 2859 18820057 ~ 18835789 (-)
stk25a stk25,stk25a,LOC108427658,LOC107733254,LOC107593165,LOC107694119 coding upstream 99427 18916625 ~ 18927201 (-)
dtymk dtymk,LOC107694123,LOC107593168,LOC107696762,LOC107552279 coding upstream 140575 18957773 ~ 18961671 (-)
agxta agxt,agxta,LOC108427662,LOC107552266,LOC107696749 coding upstream 147093 18964291 ~ 18969451 (-)
zgc:103559 LOC108272278,LOC108427664,LOC107696750,LOC107752646,LOC107552265,LOC105898261,LOC107733245 coding upstream 153110 18970308 ~ 18976937 (-)
G29551 NA non-coding downstream 182770 18634078 ~ 18634357 (-)
G29542 NA non-coding downstream 201253 18614869 ~ 18615874 (-)
G29541 NA non-coding downstream 202403 18614357 ~ 18614724 (-)
G29439 NA non-coding downstream 364151 18452468 ~ 18452976 (-)
G29237 NA non-coding downstream 974307 17784475 ~ 17842820 (-)
G29612 NA non-coding upstream 66786 18883984 ~ 18887011 (-)
G29614 farp2 non-coding upstream 73519 18890717 ~ 18895805 (-)
G29678 NA non-coding upstream 166864 18984062 ~ 19049735 (-)
G29793 NA non-coding upstream 441752 19258950 ~ 19259178 (-)
LOC117596148 NA non-coding upstream 566116 19383314 ~ 19385251 (-)
LOC113537624 NA other downstream 315 18794025 ~ 18816812 (-)
trnag-ucc NA other downstream 797 18816259 ~ 18816330 (-)
zgc:153916 LOC108271870,LOC108413223,LOC107749976 other downstream 621499 18148228 ~ 18195628 (-)
G29279 NA other downstream 744218 18070987 ~ 18072909 (-)
G29263 NA other downstream 867409 17949157 ~ 17949718 (-)
glmnb LOC108272089 other upstream 1186161 20003359 ~ 20014094 (-)
pex5la pex5l,pex5la,LOC107709207 other upstream 1542524 20359722 ~ 20429325 (-)
lepr lepr other upstream 2464166 21281364 ~ 21317823 (-)
raver2 raver2 other upstream 2632348 21449546 ~ 21531428 (-)
ccdc17 ccdc17 other upstream 3755234 22572432 ~ 22581943 (-)

Expression


Co-expression Network