numbl (numbl,LOC107374161)


Basic Information

Item Value
gene id numbl
gene name numbl,LOC107374161
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 712895 ~ 747257 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU258409
TCCTTCTGCTTTTCCCAGCCTGGCCGGGGCTTTGCTAGTGCTACATTCAGCAACCAAACAGCCTCCCATGGGCTTGCACAAAACTCACTCTCCTCCACCACCACTGTTGCTTCCAGCAGCGTTACACAGAATGGCACCATGACAAGTGGGAGTGGTAGTACCAACAACTGGCCAATGGAGAGTCTGCAGCAGTCCAATCTCCCAGCCGATGCCCAGGAAGCAGAGCGCTTTGAGGCCAAGTGGGCAGCTCTGGAGTCCAAATCACAGCCCAAGGCACCCAATCCTTTCTCCAACGATTTACAAAAGACCTTTGAAATTGAGCTATAATTGCACCCATATGGGCACCAATATAGACcctgaaatgagaaatgaaatcCCACATCCTCTTGCTTTTGGCTTCTTTTTGTTCTCCTCTTTTGTTCCTCTAACATTTGCACCTGCTCTTCACGATCAGTCCTACTCCGTAGGCAACTGTCCAATTTGCGTTTCCAAATGCAGGCATAAAACTCTTGATCTGGGAACATGACAGTATCCTAGAACCCAACAAACGTAGTCACTTAATTTGAAAGAATGGAAAGACTTCTGGGTTTGAGGTTGCTGTTGCTGCAATGACCCCGTCAAGTGAATCACATGACCTTCGACAAAACTCGCAAAGGGAGCAAATGACTGATTATGATGCGGCCAAAACGTTTATTTATTACTTCATTTGATTGtgaaaaagattttaaatctaatttgtACTCATTGAATTTGTTGTTTccctgtatttattttacattaaccCTCTGTGGCAAAAGATCACATATAATTTGGGAGTATGGAGAAGCTATGACTCACTGGACAAGAACAGAGGCTGCATGATCGGAGACTTATTGATGGAACTGCTAGTAAATGAGAGTGtaaatagcatgtttttttctcacctcTTATTTATCACCCTGTTTGTGGATGCTAATTATTATTCAAGCCCTGTGAGTCACAGCTGAAGCATCATATCGGCACCTTGCCAGCAACACACGGACATCAAACTGAGAGGCTGATTATGCTGATAAATCCCTTAGCACAAAGAGCTACAGAGCTAATTTCAGATTGACATCAGGGCTCCGGCAATGTGGCAGGAGAAGAGTCTAAAAGCTATACGTAAGTGATGGCAAAACAGAGAAGGTAAAAATGTGCCTGTTTAGACTTGACCCTGATTCGAATAGCATGGCCTGGACAGCCTGTAGCTACAGGAAAGCCTGGCATTGTTGATGAGTCAGTTTGTTTGGATATTTTTCCACAGACAGTACGtacatgtgaaaatatgtgAAAGAGATCAAGCCAGTTAGTGCTAATAGGCTTAACACTAAAGgtgaatgaaatgtcatttttcctataattgGATTTGGAGAGTTTTGGTTTGAAGACGGTGGCCAAAGAGGTAAAATGCAGACTGTACTCTATTGTAAAGTGAGGAAGAAAACGGCAAGGCCCTGATGTGAAAATGTACGTAGGAGTAATTTCTGAGGATAGACGAGATGATTAATGCTGGAGAGCAACGTTGTGATGGATTGAGTCGAAAAGATTGAGTTGTTTACAGAAAGTTTTGAAGGTGAAGGACTAGGCTTGGATTAGAAGTCCTGGAATCATGAAATCATGAACATCGTCATTTGATATGATGCCCACTTGTTcaaaatatattcttttaatTCCGTTATCATAATAAGAACATACATATGTTTCCTggctttttaactttttttcattttgaactcTTTAATCATCCTGgagaataaataaactaataatcaTATATCAAAGGCTAAAATATACTCAGCAATGTACATGCTCTAGCCATTTATCTGTCCAGGGAATCCTTCATTCCAGTGCatcacacattttgtgtatttttttatactgaTGCAGTCCTCACTCTGCAATAATGCTCCACGCTTTCTGGTAGTTTTGTTAttctaaaatgatttaaatgaacGCAGATCTCACCGTAGATCCGTGGTGTGTTCAGTAAGAACATGCTGAGTGATTGGATTTGATCTGACTCCAGCGTCTGGAGTTTCTCAGTGAGTAGGATAAAAGCTAGATATTCAAAGCCAGACTGCACACTGTGCTTTACAGAACACtgaacttaataataataataataataatgtatacaaAGGACAGGcacaatatatttacaaattgaTTCACTAAGACCACACAGTTTGCACATCACAAATTTGATCGATTTCCATCCAGTTTGTTGATCACCAACCACTAATATACAGGGTTAATAGAGCCAATGGGTCCTATTTCAATTTTCCCAAAGCGAATGTGTTTGTAATCTGGCCTAGCTGCAGGCCTTGCAGGGGAAATTTCCCTTCTAAATGAGCTTATCCGTGATCTGTGCTCTGTGTCTTTATGTTTAAAGATGCCGGGATGAATTGACACAGCTGATTACCCTGGGCTCTGGTCCATGCGTCCCCACAAAAATGTAGATCTCTTTTGAAAACAAGGAAACTAAATTACCTCATAAACTTGATTGTAAACTGTAATCTAGcgataaaaaaaacagtggagtttatttttaatctttatttacagAGTTTTGTATTTAAACCTGC
>XM_034310820.1
GAGCTGCAGCCATCGTTTTCACCTCCAGCTCCTCGTCCACTCTTTTTCTTATGTTAGTTCATCCGATTGTTTATCTGGGATGAGTTTCAGCAGTGACATGGATGAGGCAGGGGAGGGGAGTAAAAGGGAGCCTGAGAGTTTGGAGATGAATAAGCTGCGTCAGAGTTTGCGCAGAAAGAAGCCAACCTACGTGCCCGAGGCCAGCCGACCACACCAGTGGCAGGCCGACGAAGAAGCCGTGCGCAAGGGCAAATGCAGCTTCGCCGTAAGGTATCTGGGtttggtggaggtggaggagtcCAGAgggatgcatgtgtgtgaggaggCTGTGAAGAAACTGAAAGTGAGTGGAAAAAAGACGGTAAAAGCCATGCTGTGGGTCTCGGCTGATGGTCTGAGAGTGGTGGATGACAAAACCAAGGACCTCATCGTTGATCAGACCATTGAGAAGGTGTCTTTCTGTGCACCGGACCGCAACTACGACAAAGCCTTCTCTTATATCTGCCGGGATGGAACCACTCGCCGCTGGATGTGCCACTGCTTCATGGCTCTGAAGGACTCGGGTGAGCGTCTGAGTCACGCAGTAGGATGTGCATTTGCTGCATGTCTGGAGCGAAAGCAGCGACGGGAGAAGGAGTGCGGTGTCACAGCTTCGTTTGATGCCACTCGCACGTCGTTTGTCCGCGAAGGCTCATTCCGCATCTCCTCGGCCAGTCAACAGGGCGAGAGGGAGGACATCATGAAGCAGCTGCAGGACAAAAAGAAAGAAGTGTGCGCCATCCCTGCAGTGCCTCCAGGTAACGCCTCTCCGCCAGAAGGCGCAGCCACACAGGTAGAGCGAGCCGAGGCAGGCGGGCCGCATGTCATCCCACGCCGTCACGCGCCCCTCGAGCAGCTTGTGCGCCAGGGCTCATTTCGTGGTTTCCCTGCGCTCAGCCAGAAAAACTCGCCTTTTAAACGCCAGCTGTCTCTGCGCCTGAATGAGCTGCCATCCACTCTGCAGCGCAAAACTGACTTCCAGAGCAAGAACCCAGTTCCTGAGATGGACCTGTCCGTGGCTGCTGAAGCAGACAGCATCAATGCGCTGTGCAGCCAAATCAACAGTTCATTCACCAAACCCTCAGAGGACCTCAGTGGCCAAGCCGCCAGCAATGGCATGCCAGCATGCAGCGTTCCTCCTGCCATCCCTCCTCCACCTGTGCCTCAAGTTACCAGCTCGTGGGTCCAGGCGGAGCCCCCTGTTGAGTCTCCACCTTCAGCCGGCCACAGGCGCACCCCATCGGAAGCTGAACGTTGGCTGGAGGAAGTCTCCAAGGCAGTGAAAGCCCAGCAGCAGACTCCACCCACCCTGCCACCACCACCTACCCAACAGCCCCCACCAGTACCCACTGTACCCATAGCTCCAGGCTCTCTGCCAACATCCATGCAGCCCTTCCCTATGGCTTTTGACACCACTCCAGCGCCTGTGGGCATGTACAGCCAGCCGCCGCTGCAACCGGCCTATGTGCCTATGCAGCCCTACATGCCTGCCATGGCTAACAGCATGACGTACCCCAATGCCAGCATGCCTGTGGTGGGTATCACACCCTCGCAGATGGTGGCAAATGTCTTCTGCAGCGCCACTGGTTCCACAGGCGGAGGCACTATGGGGGCGAAGACTGGCACACTTGGTGGCGGTCCTTCTGCTTTTCCCAGCCTGGCCGGGGCTTCTAGTGCTACATTCAGCAACCAAACAGCCTCCCATGGGCTTGCACAAAACTCACTCTCCTCCACCACCACTGTTGCTTCCAGCAGCGTTACACAGAATGGCACCATGACAAGTGGGAGTGGTAGTACCAACAACTGGCCAATGGAGAGTCTGCAGCAGTCCAATCTCCCAGCCGATGCCCAGGAAGCAGAGCGCTTTGAGGCCAAGTGGGCAGCTCTGGAGTCCAAATCACAGCCCAAGGCACCCAATCCTTTCTCCAACGATTTACAAAAGACCTTTGAAATTGAGCTATAATTGCACCCATATGGGCACCAATATAGACcctgaaatgagaaatgaaatcCCACATCCTCTTGCTTTTGGCTTCTTTTTGTTCTCCTCTTTTGTTCCTCTAACATTTGCACCTGCTCTTCACGATCAGTCCTACTCCGTAGGCAACTGTCCAATTTGCGTTTCCAAATGCAGGCATAAAACTCTTGATCTGGGAACATGACAGTATCCTAGAACCCAACAAACGTAGTCACTTAATTTGAAAGAATGGAAAGACTTCTGGGTTTGAGGTTGCTGTTGCTGCAATGACCCCGTCAAGTGAATCACATGACCTTCGACAAAACTCGCAAAGGGAGCAAATGACTGATTATGATGCGGCCAAAACGTTTATTTATTACTTCATTTGATTGtgaaaaagattttaaatctaatttgtACTCATTGAATTTGTTGTTTccctgtatttattttacattaaccCTCTGTGGCAAAAGATCACATATAATTTGGGAGTATGGAGAAGCTATGACTCACTGGACAAGAACAGAGGCTGCATGATCGGAGACTTATTGATGGAACTGCTAGTAAATGAGAGTGtaaatagcatgtttttttctcacctcTTATTTATCACCCTGTTTGTGGATGCTAATTATTATTCAAGCCCTGTGAGTCACAGCTGAAGCATCATATCGGCACCTTGCCAGCAACACACGGACATCAAACTGAGAGGCTGATTATGCTGATAAATCCCTTAGCACAAAGAGCTACAGAGCTAATTTCAGATTGACATCAGGGCTCCGGCAATGTGGCAGGAGAAGAGTCTAAAAGCTATACGTAAGTGATGGCAAAACAGAGAAGGTAAAAATGTGCCTGTTTAGACTTGACCCTGATTCGAATAGCATGGCCTGGACAGCCTGTAGCTACAGGAAAGCCTGGCATTGTTGATGAGTCAGTTTGTTTGGATATTTTTCCACAGACAGTACGtacatgtgaaaatatgtgAAAGAGATCAAGCCAGTTAGTGCTAATAGGCTTAACACTAAAGgtgaatgaaatgtcatttttcctataattgGATTTGGAGAGTTTTGGTTTGAAGACGGTGGCCAAAGAGGTAAAATGCAGACTGTACTCTATTGTAAAGTGAGGAAGAAAACGGCAAGGCCCTGATGTGAAAATGTACGTAGGAGTAATTTCTGAGGATAGACGAGATGATTAATGCTGGAGAGCAACGTTGTGATGGATTGAGTCGAAAAGATTGAGTTGTTTACAGAAAGTTTTGAAGGTGAAGGACTAGGCTTGGATTAGAAGTCCTGGAATCATGAAATCATGAACATCGTCATTTGATATGATGCCCACTTGTTcaaaatatattcttttaatTCCGTTATCATAATAAGAACATACATATGTTTCCTggctttttaactttttttcattttgaactcTTTAATCATCCTGgagaataaataaactaataatcaTATATCAAAGGCTAAAATATACTCAGCAATGTACATGCTCTGAACAGTAAGTATTTTCAACGCCAGTACCGCTCTAGCCATTTATCTGTCCAGGGAATCCTTCATTCCAGTGCatcacacattttgtgtatttttttatactgaTGCAGTCCTCACTCTGCAATAATGCTCCACGCTTTCTGGTAGTTTTGTTAttctaaaatgatttaaatgaacGCAGATCTCACCGTAGATCCGTGGTGTGTTCAGTAAGAACATGCTGAGTGATTGGATTTGATCTGACTCCAGCGTCTGGAGTTTCTCAGTGAGTAGGATAAAAGCTAGATATTCAAAGCCAGACTGCACACTGTGCTTTACAGAACACtgaacttaataataataataataataatgtatacaaAGGACAGGcacaatatatttacaaattgaTTCACTAAGACCACACAGTTTGCACATCACAAATTTGATCGATTTCCATCCAGTTTGTTGATCACCAACCACTAATATACAGGGTTAATAGAGCCAATGGGTCCTATTTCAATTTTCCCAAAGCGAATGTGTTTGTAATCTGGCCTAGCTGCAGGCCTTGCAGGGGAAATTTCCCTTCTAAATGAGCTTATCCGTGATCTGTGCTCTGTGTCTTTATGTTTAAAGATGCCGGGATGAATTGACACAGCTGATTACCCTGGGCTCTGGTCCATGCGTCCCCACAAAAATGTAGATCTCTTTTGAAAACAAGGAAACTAAATTACCTCATAAACTTGATTGTAAACTGTAATCTAGcgataaaaaaaacagtggagtttatttttaatctttatttacagAGTTTTGTATTTAAACCTGCATATTTGTATTGTAATTACACTgtacaaagacaaataaataatataatattaagaGCCA

Function

symbol description
numbl Acts upstream of or within determination of left/right symmetry; negative regulation of Notch signaling pathway; and primitive erythrocyte differentiation. Located in cytoplasm. Is expressed in immature eye; integument; musculature system; nervous system; and pleuroperitoneal region. Orthologous to human NUMBL (NUMB like endocytic adaptor protein).

NR:

description
PREDICTED: numb-like protein isoform X1

GO:

id name namespace
GO:0045746 negative regulation of Notch signaling pathway biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0060319 primitive erythrocyte differentiation biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K06057 NUMBL; numb

RNA

RNA id representative length rna type GC content exon number start site end site
TU258409 False 2603 lncRNA 0.40 2 712954 715590
XM_034310820.1 True 4371 mRNA 0.47 10 712895 747257

Neighbor

gene id symbol gene type direction distance location
si:dkey-243k1.3 LOC108278393,LOC103026943 coding downstream 85077 626147 ~ 627818 (-)
pnkp pnkp,LOC102779955 coding downstream 90283 611024 ~ 622612 (-)
trappc6bl trappc6bl,LOC108278287,LOC108433979,LOC107678240,LOC107561377,LOC107684201 coding downstream 140466 567507 ~ 572429 (-)
zgc:114130 LOC108278286 coding downstream 159423 551015 ~ 553472 (-)
zgc:172282 zgc:172282,LOC108277461,LOC108433964,LOC107758157,LOC107697541,LOC107749639,LOC107678250 coding downstream 247904 395392 ~ 464991 (-)
coq8b coq8b,LOC108277830,LOC108442867 coding upstream 25709 772966 ~ 786174 (-)
slc5a2 slc5a2,LOC107678242 coding upstream 47668 794925 ~ 807926 (-)
si:dkey-260j18.2 si:dkey-260j18.2,LOC108278347,LOC108442862,LOC103030600,LOC105903253,LOC107758546,LOC107561384 coding upstream 63641 810898 ~ 818662 (-)
agfg1a agfg1,LOC108413522,LOC107683378 coding upstream 76472 823729 ~ 853826 (-)
mrpl44 mrpl44 coding upstream 110081 857338 ~ 861595 (-)
G218066 NA non-coding downstream 301844 388703 ~ 411051 (-)
G218064 NA non-coding downstream 330591 381748 ~ 382304 (-)
G218024 NA non-coding downstream 453954 252132 ~ 258941 (-)
G218028 NA non-coding downstream 497924 214451 ~ 214971 (-)
G217401 NA non-coding downstream 639737 69744 ~ 73158 (-)
G218191 fbxo46 non-coding upstream 44516 791773 ~ 863445 (-)
G218208 NA non-coding upstream 100139 847396 ~ 847640 (-)
G218268 NA non-coding upstream 345534 1092791 ~ 1093179 (-)
LOC117599090 NA non-coding upstream 376172 1123429 ~ 1127973 (-)
G218306 nyap2 non-coding upstream 413456 1160713 ~ 1161109 (-)
dpf1 dpf1,LOC107672425,LOC107561370,LOC107749650,LOC107758770 other downstream 28437 635615 ~ 684458 (-)
G218214 NA other upstream 131515 878772 ~ 879183 (-)
mecom LOC108278348,LOC108269179 other upstream 208223 955480 ~ 1102884 (-)
G218265 NA other upstream 333031 1080288 ~ 1134018 (-)
G218302 nyap2 other upstream 407153 1154410 ~ 1154700 (-)
trnag-ucc_17 NA other upstream 749622 1496879 ~ 1497106 (-)

Expression


Co-expression Network