G218184


Basic Information

Item Value
gene id G218184
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 731362 ~ 741843 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU258419
gttttcggctgtgtagcgtaacactgttgtATTTTTAACTGTGTAGTGTAAAACGGTTGTTTTTTCGGCTGTGTAGCataacactgttgtgtttttaactgtgtagtgtaacactgttgtgtttttcgcTGTGTAGCGTAatattgttctgttttgggctgtgtagcgtaacattgttctgttttgggctgtgtagcgtaacactgttgtgtttagggctgtgtagcgtaccactgttgtgtttttgactgTGTAGCGTaaaactgttgtgtttttaactgTGTAGCGTAAAACTGTTCTGTTTTTgactgtgtagcgtaacacagttctgttttgggctgtgtagcgtaacactgttctgtttttgactgtgtagcgtaacactgttctgtgttgGGGTGTGTAGCGTAATATtgttctgttttcggctgtgtagcgtaacactgttgtgtttttaactgTGTAGTGTAACATtgttctgttttcggctgtgtagcataacactgttctgtttttggctgtgtagcctaacactgtttttttgggctgtgtagcgcaacacagttctgttttcggctgtgtagcgtaacactgttgtgtttttaactgtgtagcgtaacactgttgtgtttttaactgTGTAGCGTaatattgttctgtttttggctgtgtagcgcaacactgttctgtttagGGCTGTGTAGCCTAACCCTGTtttttttgggctgtgtagcgcaacacagttctgttttcggctgtgtagtgtaacactgttctgttttgggctgtgtagcgtaacactgttctgttttgggctgtgtagcataacactgttgtgtttttaactgtgtagcgtaacactgttctgttttcgaCTGTGTAGCGTAAAACTGTTCTGTTtagggctgtgtagcgtaacaatgttgtgtttttaactgtgtagcgtaacacagttctgttttcggctgtgtagcgtaacactgttgtgtttttaactgtgtagcgtaacacagTTCTGTTTTCGGGTGTGTAGCGTAACATTGTTCTGTTtagggctgtgtagcgtaacattGTTGTGTTCTCGGCtttgtagcgtaacactgttgtTTTctcggctgtgtagcgtaacattGTTCTGTTTTCggctgtgtagcgtaacactgttctgttttcggctgtgtagcgtaacactgttctgttttgggctgtgtagcgtaacattgttctgtttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU258419 True 1232 lncRNA 0.42 3 731362 741843

Neighbor

gene id symbol gene type direction distance location
si:dkey-243k1.3 LOC108278393,LOC103026943 coding downstream 103544 626147 ~ 627818 (-)
pnkp pnkp,LOC102779955 coding downstream 108750 611024 ~ 622612 (-)
trappc6bl trappc6bl,LOC108278287,LOC108433979,LOC107678240,LOC107561377,LOC107684201 coding downstream 158933 567507 ~ 572429 (-)
zgc:114130 LOC108278286 coding downstream 177890 551015 ~ 553472 (-)
zgc:172282 zgc:172282,LOC108277461,LOC108433964,LOC107758157,LOC107697541,LOC107749639,LOC107678250 coding downstream 266371 395392 ~ 464991 (-)
coq8b coq8b,LOC108277830,LOC108442867 coding upstream 31123 772966 ~ 786174 (-)
slc5a2 slc5a2,LOC107678242 coding upstream 53082 794925 ~ 807926 (-)
si:dkey-260j18.2 si:dkey-260j18.2,LOC108278347,LOC108442862,LOC103030600,LOC105903253,LOC107758546,LOC107561384 coding upstream 69055 810898 ~ 818662 (-)
agfg1a agfg1,LOC108413522,LOC107683378 coding upstream 81886 823729 ~ 853826 (-)
mrpl44 mrpl44 coding upstream 115495 857338 ~ 861595 (-)
G218066 NA non-coding downstream 320311 388703 ~ 411051 (-)
G218064 NA non-coding downstream 349058 381748 ~ 382304 (-)
G218024 NA non-coding downstream 472421 252132 ~ 258941 (-)
G218028 NA non-coding downstream 516391 214451 ~ 214971 (-)
G217401 NA non-coding downstream 658204 69744 ~ 73158 (-)
G218191 fbxo46 non-coding upstream 49930 791773 ~ 863445 (-)
G218208 NA non-coding upstream 105553 847396 ~ 847640 (-)
G218268 NA non-coding upstream 350948 1092791 ~ 1093179 (-)
LOC117599090 NA non-coding upstream 381586 1123429 ~ 1127973 (-)
G218306 nyap2 non-coding upstream 418870 1160713 ~ 1161109 (-)
dpf1 dpf1,LOC107672425,LOC107561370,LOC107749650,LOC107758770 other downstream 46904 635615 ~ 684458 (-)
G218214 NA other upstream 136929 878772 ~ 879183 (-)
mecom LOC108278348,LOC108269179 other upstream 213637 955480 ~ 1102884 (-)
G218265 NA other upstream 338445 1080288 ~ 1134018 (-)
G218302 nyap2 other upstream 412567 1154410 ~ 1154700 (-)
trnag-ucc_17 NA other upstream 755036 1496879 ~ 1497106 (-)

Expression


Co-expression Network