G218208


Basic Information

Item Value
gene id G218208
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 847396 ~ 847640 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU258460
GTTCGGGATGGAGATGTGGCCTGCTAGTAGGGGTTAGGAATGGTGTTACGGATGATGGGAATAATCAGGAATCTCCATAAAATCTCCTTGTAGGCGAATCTGGATTtcgaggtgtgtgtgagtgtgtgtgtgtgttttgtgaacCCTCCTGCAGGAAGTGGGAGCTGGATTCCACTGCATCAGCACCATGTGGTCAACTTGTGTAACAGGAAGTGGAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU258460 True 219 lncRNA 0.49 2 847396 847640

Neighbor

gene id symbol gene type direction distance location
si:dkey-260j18.2 si:dkey-260j18.2,LOC108278347,LOC108442862,LOC103030600,LOC105903253,LOC107758546,LOC107561384 coding downstream 28734 810898 ~ 818662 (-)
slc5a2 slc5a2,LOC107678242 coding downstream 39470 794925 ~ 807926 (-)
coq8b coq8b,LOC108277830,LOC108442867 coding downstream 61222 772966 ~ 786174 (-)
si:dkey-243k1.3 LOC108278393,LOC103026943 coding downstream 219578 626147 ~ 627818 (-)
pnkp pnkp,LOC102779955 coding downstream 224784 611024 ~ 622612 (-)
mrpl44 mrpl44 coding upstream 9698 857338 ~ 861595 (-)
mffa mff coding upstream 16050 863690 ~ 876945 (-)
LOC113533231 LOC107568747,LOC107697496 coding upstream 269714 1117354 ~ 1119675 (-)
LOC117599093 NA coding upstream 272152 1119792 ~ 1121387 (-)
LOC117599094 LOC107697487 coding upstream 273442 1121082 ~ 1122737 (-)
G218184 NA non-coding downstream 105553 731362 ~ 741843 (-)
G218188 NA non-coding downstream 107398 734370 ~ 739998 (-)
G218187 NA non-coding downstream 109178 733617 ~ 738218 (-)
G218185 NA non-coding downstream 110503 731516 ~ 736893 (-)
G218066 NA non-coding downstream 436345 388703 ~ 411051 (-)
G218268 NA non-coding upstream 245151 1092791 ~ 1093179 (-)
LOC117599090 NA non-coding upstream 275789 1123429 ~ 1127973 (-)
G218306 nyap2 non-coding upstream 313073 1160713 ~ 1161109 (-)
G218324 NA non-coding upstream 370591 1218231 ~ 1227815 (-)
G218325 NA non-coding upstream 373513 1221153 ~ 1222614 (-)
numbl numbl,LOC107374161 other downstream 100139 712895 ~ 747257 (-)
dpf1 dpf1,LOC107672425,LOC107561370,LOC107749650,LOC107758770 other downstream 162938 635615 ~ 684458 (-)
G218214 NA other upstream 31132 878772 ~ 879183 (-)
mecom LOC108278348,LOC108269179 other upstream 107840 955480 ~ 1102884 (-)
G218265 NA other upstream 232648 1080288 ~ 1134018 (-)
G218302 nyap2 other upstream 306770 1154410 ~ 1154700 (-)
trnag-ucc_17 NA other upstream 649239 1496879 ~ 1497106 (-)

Expression


Co-expression Network