G218324


Basic Information

Item Value
gene id G218324
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 1218231 ~ 1227815 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU258603
TGTAAGAGGGGCttgacaggaaacaggaagaggTAGACATTAAGGCCGAGCGTCACTAGTGTAGCAGGAGGGATGTTGTCCGTGCCGATCTGGAACACCTGAGACGCCAGCAAGAGCAGGCCAAGATTAAATCCTCGCTGTCTGGTACgcatctgaaacacacacacacacacacacacacacacacacacacaaatgtactcTGCattattacaccacagcgcattctgattggtcagaaggcgctGATTCATCTTCTAGCAGCGTGTATGGCTGTGACGTTTTCTCTAAGatatttatttggcatttttggaaggagtctccagtgtcagtaactTTCCGcgtcatgggaaagtcttcaggacagacgagtttctggtttctctgtagcatgacaatctgtgggtttttttttattgttattattaactgcaagagagagatagagaaaaaaatcgAGGCTGGAGAAAGCACGATTGCTCTGATGTAGTATATCTGTTacaatgcaagtgataacaggaactagcttgctTTTCAGACATTCCACGACAtaaaaagtaactataaattgataaaaaagtatgtgtcTcactcacacacacacacacacacaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU258603 True 615 lncRNA 0.43 2 1218231 1227815

Neighbor

gene id symbol gene type direction distance location
irs1 irs1,LOC107577679 coding downstream 1035 1198113 ~ 1217196 (-)
LOC117599094 LOC107697487 coding downstream 95494 1121082 ~ 1122737 (-)
LOC117599093 NA coding downstream 96844 1119792 ~ 1121387 (-)
LOC113533231 LOC107568747,LOC107697496 coding downstream 98556 1117354 ~ 1119675 (-)
mffa mff coding downstream 341286 863690 ~ 876945 (-)
col4a4 NA coding upstream 7092 1234907 ~ 1290435 (-)
slc8a2b slc8a2b,LOC108277508,LOC108433971,LOC107725154,LOC107670115,LOC107585757,LOC107558827 coding upstream 165462 1393277 ~ 1447217 (-)
gmnc gmnc coding upstream 242005 1469820 ~ 1474274 (-)
zgc:162872 LOC108277719 coding upstream 277674 1505489 ~ 1514055 (-)
ilkap ilkap,LOC107725757,LOC107756217 coding upstream 287158 1514973 ~ 1519815 (-)
G218306 nyap2 non-coding downstream 57122 1160713 ~ 1161109 (-)
LOC117599090 NA non-coding downstream 90258 1123429 ~ 1127973 (-)
G218268 NA non-coding downstream 125052 1092791 ~ 1093179 (-)
G218191 fbxo46 non-coding downstream 354786 791773 ~ 863445 (-)
G218208 NA non-coding downstream 370591 847396 ~ 847640 (-)
G218347 NA non-coding upstream 100323 1328138 ~ 1357336 (-)
G218377 NA non-coding upstream 264585 1492400 ~ 1493405 (-)
trnag-ucc_16 NA non-coding upstream 267947 1495762 ~ 1495833 (-)
LOC113544681 NA non-coding upstream 318630 1546445 ~ 1568191 (-)
G218695 NA non-coding upstream 349066 1576881 ~ 1577211 (-)
G218302 nyap2 other downstream 63531 1154410 ~ 1154700 (-)
G218265 NA other downstream 84213 1080288 ~ 1134018 (-)
mecom LOC108278348,LOC108269179 other downstream 115347 955480 ~ 1102884 (-)
G218214 NA other downstream 339048 878772 ~ 879183 (-)
numbl numbl,LOC107374161 other downstream 470974 712895 ~ 747257 (-)
trnag-ucc_17 NA other upstream 269064 1496879 ~ 1497106 (-)
trnag-ucc_18 NA other upstream 269525 1497340 ~ 1497411 (-)
scaf4b LOC108411133 other upstream 1053586 2281401 ~ 2320915 (-)
gal3st2 LOC108261785,LOC108277996 other upstream 1385042 2612857 ~ 2629901 (-)
G219642 NA other upstream 1660092 2887907 ~ 2963350 (-)

Expression


Co-expression Network