Gene
RNA
| Item | Value |
|---|---|
| gene id | G218325 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047608.1 |
| NCBI id | CM018554.1 |
| chromosome length | 25848897 |
| location | 1221153 ~ 1222614 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU258604 | True | 205 | lncRNA | 0.48 | 3 | 1221153 | 1222614 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| irs1 | irs1,LOC107577679 | coding | downstream | 3957 | 1198113 ~ 1217196 (-) |
| LOC117599094 | LOC107697487 | coding | downstream | 98416 | 1121082 ~ 1122737 (-) |
| LOC117599093 | NA | coding | downstream | 99766 | 1119792 ~ 1121387 (-) |
| LOC113533231 | LOC107568747,LOC107697496 | coding | downstream | 101478 | 1117354 ~ 1119675 (-) |
| mffa | mff | coding | downstream | 344208 | 863690 ~ 876945 (-) |
| col4a4 | NA | coding | upstream | 12293 | 1234907 ~ 1290435 (-) |
| slc8a2b | slc8a2b,LOC108277508,LOC108433971,LOC107725154,LOC107670115,LOC107585757,LOC107558827 | coding | upstream | 170663 | 1393277 ~ 1447217 (-) |
| gmnc | gmnc | coding | upstream | 247206 | 1469820 ~ 1474274 (-) |
| zgc:162872 | LOC108277719 | coding | upstream | 282875 | 1505489 ~ 1514055 (-) |
| ilkap | ilkap,LOC107725757,LOC107756217 | coding | upstream | 292359 | 1514973 ~ 1519815 (-) |
| G218306 | nyap2 | non-coding | downstream | 60044 | 1160713 ~ 1161109 (-) |
| LOC117599090 | NA | non-coding | downstream | 93180 | 1123429 ~ 1127973 (-) |
| G218268 | NA | non-coding | downstream | 127974 | 1092791 ~ 1093179 (-) |
| G218191 | fbxo46 | non-coding | downstream | 357708 | 791773 ~ 863445 (-) |
| G218347 | NA | non-coding | upstream | 105524 | 1328138 ~ 1357336 (-) |
| G218377 | NA | non-coding | upstream | 269786 | 1492400 ~ 1493405 (-) |
| trnag-ucc_16 | NA | non-coding | upstream | 273148 | 1495762 ~ 1495833 (-) |
| LOC113544681 | NA | non-coding | upstream | 323831 | 1546445 ~ 1568191 (-) |
| G218695 | NA | non-coding | upstream | 354267 | 1576881 ~ 1577211 (-) |
| G218302 | nyap2 | other | downstream | 66453 | 1154410 ~ 1154700 (-) |
| G218265 | NA | other | downstream | 87135 | 1080288 ~ 1134018 (-) |
| mecom | LOC108278348,LOC108269179 | other | downstream | 118269 | 955480 ~ 1102884 (-) |
| G218214 | NA | other | downstream | 341970 | 878772 ~ 879183 (-) |
| numbl | numbl,LOC107374161 | other | downstream | 473896 | 712895 ~ 747257 (-) |
| trnag-ucc_17 | NA | other | upstream | 274265 | 1496879 ~ 1497106 (-) |
| trnag-ucc_18 | NA | other | upstream | 274726 | 1497340 ~ 1497411 (-) |
| scaf4b | LOC108411133 | other | upstream | 1058787 | 2281401 ~ 2320915 (-) |
| gal3st2 | LOC108261785,LOC108277996 | other | upstream | 1390243 | 2612857 ~ 2629901 (-) |
| G219642 | NA | other | upstream | 1665293 | 2887907 ~ 2963350 (-) |
