Gene
RNA
| Item | Value |
|---|---|
| gene id | G218347 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047608.1 |
| NCBI id | CM018554.1 |
| chromosome length | 25848897 |
| location | 1328138 ~ 1357336 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU258627 | True | 277 | lncRNA | 0.29 | 2 | 1328138 | 1357336 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| col4a4 | NA | coding | downstream | 37703 | 1234907 ~ 1290435 (-) |
| irs1 | irs1,LOC107577679 | coding | downstream | 110942 | 1198113 ~ 1217196 (-) |
| LOC117599094 | LOC107697487 | coding | downstream | 205401 | 1121082 ~ 1122737 (-) |
| LOC117599093 | NA | coding | downstream | 206751 | 1119792 ~ 1121387 (-) |
| LOC113533231 | LOC107568747,LOC107697496 | coding | downstream | 208463 | 1117354 ~ 1119675 (-) |
| slc8a2b | slc8a2b,LOC108277508,LOC108433971,LOC107725154,LOC107670115,LOC107585757,LOC107558827 | coding | upstream | 35941 | 1393277 ~ 1447217 (-) |
| gmnc | gmnc | coding | upstream | 112484 | 1469820 ~ 1474274 (-) |
| zgc:162872 | LOC108277719 | coding | upstream | 148153 | 1505489 ~ 1514055 (-) |
| ilkap | ilkap,LOC107725757,LOC107756217 | coding | upstream | 157637 | 1514973 ~ 1519815 (-) |
| LOC113544537 | dgkd | coding | upstream | 163991 | 1521327 ~ 1540722 (-) |
| G218324 | NA | non-coding | downstream | 100323 | 1218231 ~ 1227815 (-) |
| G218325 | NA | non-coding | downstream | 105524 | 1221153 ~ 1222614 (-) |
| G218306 | nyap2 | non-coding | downstream | 167029 | 1160713 ~ 1161109 (-) |
| LOC117599090 | NA | non-coding | downstream | 200165 | 1123429 ~ 1127973 (-) |
| G218268 | NA | non-coding | downstream | 234959 | 1092791 ~ 1093179 (-) |
| G218377 | NA | non-coding | upstream | 135064 | 1492400 ~ 1493405 (-) |
| trnag-ucc_16 | NA | non-coding | upstream | 138426 | 1495762 ~ 1495833 (-) |
| LOC113544681 | NA | non-coding | upstream | 189109 | 1546445 ~ 1568191 (-) |
| G218695 | NA | non-coding | upstream | 219545 | 1576881 ~ 1577211 (-) |
| LOC117599072 | NA | non-coding | upstream | 246075 | 1603411 ~ 1616938 (-) |
| G218302 | nyap2 | other | downstream | 173438 | 1154410 ~ 1154700 (-) |
| G218265 | NA | other | downstream | 194120 | 1080288 ~ 1134018 (-) |
| mecom | LOC108278348,LOC108269179 | other | downstream | 225254 | 955480 ~ 1102884 (-) |
| G218214 | NA | other | downstream | 448955 | 878772 ~ 879183 (-) |
| numbl | numbl,LOC107374161 | other | downstream | 580881 | 712895 ~ 747257 (-) |
| trnag-ucc_17 | NA | other | upstream | 139543 | 1496879 ~ 1497106 (-) |
| trnag-ucc_18 | NA | other | upstream | 140004 | 1497340 ~ 1497411 (-) |
| scaf4b | LOC108411133 | other | upstream | 924065 | 2281401 ~ 2320915 (-) |
| gal3st2 | LOC108261785,LOC108277996 | other | upstream | 1255521 | 2612857 ~ 2629901 (-) |
| G219642 | NA | other | upstream | 1530571 | 2887907 ~ 2963350 (-) |
