G218377



Basic Information


Item Value
gene id G218377
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 1492400 ~ 1493405 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>TU258664
GTCAAAGTGCACTAGTGCCATACATATAAAGTGCCGTACATGCAAAAGAGACCATCGTGTGTATCCCCATGAGCACTCGTGTTGTAAACATCCAACCCAACAATGGTTCCGGGATACATTCGCAGCAATTCACATTATACATAAGATgttgacacattatctatactttcacttaagtatacttatatttattgtatactTATATTACAGTACTTACTCATGTGAGTGAATATGATATTTACAGGCAACATAttgtctcagtctctcttctATATTGTCACTGACAGATTTTCCGCTGCTGCCTCCTAGGAATTCATTTTAGATGTTTAGCATGTTATCGAGCATAGTGCTTTCTTAAAGAAACAAGACAATCATCATGCTTAGAGCCTTTAATTGTAACAGAATTTACAGTGTAGTCAGATGACAGTATCACAGGAATTCCTGGCTTTATTGGAAATGGTGAGCTATTAAGATGAGTGATTAGTGAATAGATCTCCTGGTCTTCTCATTGCAATGCAGAGGAATTCCTCTGTGGGTTAGACTTAAGGACCTTAACACATTCCCTTGTGAATCACCTTCACATGCTGGTTTCGTTttTTTTCCATACAGAGAACACACTCGGTTGAGTATGtttcaccatcatcaccacacaCTGGGTCGAACTCACGGGTGCACATTAAAGTCGCATACTTTTCACACTCAGCCTATTATAGATCACAATATCATacttgaataaataataaatcaaacaagGTGTAattattggaaaattgctgtcttagaagaagaataaaacactttgggacgaGCTGTGCGTCAAGCCCCATCACACCGCCctgacattgattatttt

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU258664 True 853 lncRNA 0.38 2 1492400 1493405

Neighbor


gene id symbol gene type direction distance location
gmnc gmnc coding downstream 18126 1469820 ~ 1474274 (-)
slc8a2b slc8a2b,LOC108277508,LOC108433971,LOC107725154,LOC107670115,LOC107585757,LOC107558827 coding downstream 45183 1393277 ~ 1447217 (-)
col4a4 NA coding downstream 201965 1234907 ~ 1290435 (-)
irs1 irs1,LOC107577679 coding downstream 275204 1198113 ~ 1217196 (-)
LOC117599094 LOC107697487 coding downstream 369663 1121082 ~ 1122737 (-)
zgc:162872 LOC108277719 coding upstream 12084 1505489 ~ 1514055 (-)
ilkap ilkap,LOC107725757,LOC107756217 coding upstream 21568 1514973 ~ 1519815 (-)
LOC113544537 dgkd coding upstream 27922 1521327 ~ 1540722 (-)
sagb LOC108411842,LOC107756220,LOC107670108,LOC107689591,LOC107600819 coding upstream 53538 1546943 ~ 1558304 (-)
atg16l1 atg16l1,LOC107689588,LOC107551872 coding upstream 67164 1560569 ~ 1581029 (-)
G218347 NA non-coding downstream 135064 1328138 ~ 1357336 (-)
G218324 NA non-coding downstream 264585 1218231 ~ 1227815 (-)
G218325 NA non-coding downstream 269786 1221153 ~ 1222614 (-)
G218306 nyap2 non-coding downstream 331291 1160713 ~ 1161109 (-)
LOC117599090 NA non-coding downstream 364427 1123429 ~ 1127973 (-)
trnag-ucc_16 NA non-coding upstream 2357 1495762 ~ 1495833 (-)
LOC113544681 NA non-coding upstream 53040 1546445 ~ 1568191 (-)
G218695 NA non-coding upstream 83476 1576881 ~ 1577211 (-)
LOC117599072 NA non-coding upstream 110006 1603411 ~ 1616938 (-)
G218720 NA non-coding upstream 131079 1624484 ~ 1682087 (-)
G218302 nyap2 other downstream 337700 1154410 ~ 1154700 (-)
G218265 NA other downstream 358382 1080288 ~ 1134018 (-)
mecom LOC108278348,LOC108269179 other downstream 389516 955480 ~ 1102884 (-)
G218214 NA other downstream 613217 878772 ~ 879183 (-)
numbl numbl,LOC107374161 other downstream 745143 712895 ~ 747257 (-)
trnag-ucc_17 NA other upstream 3474 1496879 ~ 1497106 (-)
trnag-ucc_18 NA other upstream 3935 1497340 ~ 1497411 (-)
scaf4b LOC108411133 other upstream 787996 2281401 ~ 2320915 (-)
gal3st2 LOC108261785,LOC108277996 other upstream 1119452 2612857 ~ 2629901 (-)
G219642 NA other upstream 1394502 2887907 ~ 2963350 (-)

Expression



Co-expression Network