LOC113544681


Basic Information

Item Value
gene id LOC113544681
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 1546445 ~ 1568191 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU259076
GGCAACGTTGTTTTGAATGTTACCTTACTCTTTACAAGGAAGGTCAGTGATGAGCTGTAAAAGGTCTGAAGCCGAGAGCTCCGCCCCCTCCAGCTCCTCGGATCCTCCCAGCCCACCTGCTGTTTTTCCCAGCATgctctaggtgtgtgtgtttgggctgcATGGTGGCTGATACCGAGAGCCGTTCtgctcagcgtgtgtgtgtacgagagagagacagcatcaTACACAGAGTAGAAACGTCTGACAGAAACATTCACATTCTcacttcattacacacacacacacacacacacacacacacacacacacacacacacacacacacacagaggacggAGCTTCAGGGGGTGAGCGGCTCATGATCTCCAGTTTTCAATCTGAGACCTTCGATCAGAAACAAAATGTTATTATGAATCAACTGAGTTGATTGACATGAATCAGAGTGAGTCATTCAGTATAAccaattaaataatgaatcaaatgaataAAATCGCTGGCTAATATGAACAGATCCGTATGAATCGATATGAATTGAACGAATCGTTCAGTACGAATGAAATAGCAGGAATAGTTCACGTGGaggtgtg
>TU259077
GGCAACGTTGTTTTGAATGTTACCTTACTCTTTACAAGGAAGGTCAGTGATGAGCTGTAAAAGGTCTGAAGCCGAGAGCTCCGCCCCCTCCAGCTCCTCGGATCCTCCCAGCCCACCTGCTGTTTTTCCCAGCATgctctaggtgtgtgtgtttgggctgcATGGTGGCTGATACCGAGAGCCGTTCtgctcagcgtgtgtgtgtacgagagagagacagcatcaTACACAGAGTAGAAACGTCTGACAGAAACATTCACATTCTcacttcattacacacacacacacacacacacacacacacacgaggacggAGCTTCAGGGGGTGAGCGGCTCATGATCTCCAGTTTTCAATCTGAGACCTTCGATCAGAAACAAAATGTTATTATGAATCAACTGAGTTGATTGACATGAATCAGAGTGAGTCATTCAGTATAAccaattaaataatgaatcaaatgaataAAATCGCTGGCTAATATGAACAGATCCGTATGAATCGATATGAATTGAACGAATCGTTCAGTACGAATGAAATAGCAGGAATAGTTCACGTGGaggtgtg
>TU259078
GGCAACGTTGTTTTGAATGTTACCTTACTCTTTACAAGGAAGGTCAGTGATGAGCTGTAAAAGGTCTGAAGCCGAGAGCTCCGCCCCCTCCAGCTCCTCGGATCCTCCCAGCCCACCTGCTGTTTTTCCCAGCATgctctaggtgtgtgtgtttgggctgcATGGTGGCTGATACCGAGAGCCGTTCtgctcagcgtgtgtgtgtacgagagagagacagcatcaTACACAGAGTAGAAACGTCTGACAGAAACATTCACATTCTcacttcattacacacacacacacacacacacacacacgaggacggAGCTTCAGGGGGTGAGCGGCTCATGATCTCCAGTTTTCAATCTGAGACCTTCGATCAGAAACAAAATGTTATTATGAATCAACTGAGTTGATTGACATGAATCAGAGTGAGTCATTCAGTATAAccaattaaataatgaatcaaatgaataAAATCGCTGGCTAATATGAACAGATCCGTATGAATCGATATGAATTGAACGAATCGTTCAGTACGAATGAAATAGCAGGAATAGTTCACGTGGaggtgtg
>TU259081
GGCAACGTTGTTTTGAATGTTACCTTACTCTTTACAAGGAAGGTCAGTGATGAGCTGTAAAAGGTCTGAAGCCGAGAGCTCCGCCCCCTCCAGCTCCTCGGATCCTCCCAGCCCACCTGCTGTTTTTCCCAGCATgctctaggtgtgtgtgtttgggctgcATGGTGGCTGATACCGAGAGCCGTTCtgctcagcgtgtgtgtgtacgagagagagacagcatcaTACACAGAGTAGAAACGTCTGACAGAAACATTCACATTCTcacttcattacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagtg
>XR_003404538.2
GGTCAGTGATGAGCTGTAAAAGGTCTGAAGCCGAGAGCTCCGCCCCCTCCAGCTCCTCGGATCCTCCCAGCCCACCTGCTGTTTTTCCCAGCATgctctaggtgtgtgtgtttgggctgcATGGTGGCTGATACCGAGAGCCGTTCtgctcagcgtgtgtgtgtacgagagagagacagcatcaTACACAGAGTAGAAACGTCTGACAGAAACATTCACATTCTcacttcattacacacacacacacacacacacacacacacacacacacacacacacacacacacacagaggacggAGCTTCAGGGGGTGAGCGGCTCATGATCTCCAGTTTTCAATCTGAGACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU259076 True 590 lncRNA 0.45 2 1567520 1568191
TU259077 False 565 lncRNA 0.45 3 1567520 1568191
TU259078 False 561 lncRNA 0.45 3 1567520 1568191
TU259081 False 372 lncRNA 0.51 2 1546445 1568191
XR_003404538.2 False 347 lncRNA 0.53 1 1567804 1568150

Neighbor

gene id symbol gene type direction distance location
LOC113544537 dgkd coding downstream 5723 1521327 ~ 1540722 (-)
ilkap ilkap,LOC107725757,LOC107756217 coding downstream 26630 1514973 ~ 1519815 (-)
zgc:162872 LOC108277719 coding downstream 32390 1505489 ~ 1514055 (-)
gmnc gmnc coding downstream 72171 1469820 ~ 1474274 (-)
slc8a2b slc8a2b,LOC108277508,LOC108433971,LOC107725154,LOC107670115,LOC107585757,LOC107558827 coding downstream 99228 1393277 ~ 1447217 (-)
cldn15lb cldn1 coding upstream 13206 1581397 ~ 1588455 (-)
LOC113544557 parl coding upstream 24402 1592593 ~ 1597472 (-)
fzd4 fzd4 coding upstream 114574 1682765 ~ 1690584 (-)
pdgfd pdgfd coding upstream 230489 1798680 ~ 1813081 (-)
gucy1a2 gucy1a2,LOC107706059,LOC107669873 coding upstream 355477 1923668 ~ 1946156 (-)
trnag-ucc_16 NA non-coding downstream 50612 1495762 ~ 1495833 (-)
G218377 NA non-coding downstream 53040 1492400 ~ 1493405 (-)
G218347 NA non-coding downstream 189109 1328138 ~ 1357336 (-)
G218324 NA non-coding downstream 318630 1218231 ~ 1227815 (-)
G218325 NA non-coding downstream 323831 1221153 ~ 1222614 (-)
G218695 NA non-coding upstream 8690 1576881 ~ 1577211 (-)
LOC117599072 NA non-coding upstream 35220 1603411 ~ 1616938 (-)
G218720 NA non-coding upstream 56293 1624484 ~ 1682087 (-)
G218734 NA non-coding upstream 107573 1675764 ~ 1676214 (-)
G218768 NA non-coding upstream 202024 1770215 ~ 1770452 (-)
trnag-ucc_18 NA other downstream 49034 1497340 ~ 1497411 (-)
trnag-ucc_17 NA other downstream 49339 1496879 ~ 1497106 (-)
G218302 nyap2 other downstream 391745 1154410 ~ 1154700 (-)
G218265 NA other downstream 412427 1080288 ~ 1134018 (-)
mecom LOC108278348,LOC108269179 other downstream 443561 955480 ~ 1102884 (-)
scaf4b LOC108411133 other upstream 713210 2281401 ~ 2320915 (-)
gal3st2 LOC108261785,LOC108277996 other upstream 1044666 2612857 ~ 2629901 (-)
G219642 NA other upstream 1319716 2887907 ~ 2963350 (-)
G219651 NA other upstream 1339135 2907326 ~ 2911165 (-)
igsf11 igsf11 other upstream 2159186 3727377 ~ 3807114 (-)

Expression


Co-expression Network