Gene
RNA
| Item | Value |
|---|---|
| gene id | G218734 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047608.1 |
| NCBI id | CM018554.1 |
| chromosome length | 25848897 |
| location | 1675764 ~ 1676214 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU259150 | True | 328 | lncRNA | 0.57 | 2 | 1675764 | 1676214 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC113544557 | parl | coding | downstream | 78292 | 1592593 ~ 1597472 (-) |
| cldn15lb | cldn1 | coding | downstream | 87309 | 1581397 ~ 1588455 (-) |
| atg16l1 | atg16l1,LOC107689588,LOC107551872 | coding | downstream | 94735 | 1560569 ~ 1581029 (-) |
| sagb | LOC108411842,LOC107756220,LOC107670108,LOC107689591,LOC107600819 | coding | downstream | 117460 | 1546943 ~ 1558304 (-) |
| LOC113544537 | dgkd | coding | downstream | 135042 | 1521327 ~ 1540722 (-) |
| fzd4 | fzd4 | coding | upstream | 6551 | 1682765 ~ 1690584 (-) |
| pdgfd | pdgfd | coding | upstream | 122466 | 1798680 ~ 1813081 (-) |
| gucy1a2 | gucy1a2,LOC107706059,LOC107669873 | coding | upstream | 247454 | 1923668 ~ 1946156 (-) |
| cwf19l2 | cwf19l2 | coding | upstream | 273767 | 1949981 ~ 1965960 (-) |
| trnag-ucc_22 | NA | coding | upstream | 293198 | 1969412 ~ 1969483 (-) |
| LOC117599072 | NA | non-coding | downstream | 58826 | 1603411 ~ 1616938 (-) |
| G218695 | NA | non-coding | downstream | 98553 | 1576881 ~ 1577211 (-) |
| LOC113544681 | NA | non-coding | downstream | 107573 | 1546445 ~ 1568191 (-) |
| trnag-ucc_16 | NA | non-coding | downstream | 179931 | 1495762 ~ 1495833 (-) |
| G218377 | NA | non-coding | downstream | 182359 | 1492400 ~ 1493405 (-) |
| G218768 | NA | non-coding | upstream | 94001 | 1770215 ~ 1770452 (-) |
| G218773 | NA | non-coding | upstream | 101532 | 1777746 ~ 1786974 (-) |
| G218825 | NA | non-coding | upstream | 241499 | 1917713 ~ 1918020 (-) |
| G218840 | NA | non-coding | upstream | 273064 | 1949278 ~ 1949551 (-) |
| G218850 | NA | non-coding | upstream | 301828 | 1978042 ~ 1980907 (-) |
| trnag-ucc_18 | NA | other | downstream | 178353 | 1497340 ~ 1497411 (-) |
| trnag-ucc_17 | NA | other | downstream | 178658 | 1496879 ~ 1497106 (-) |
| G218302 | nyap2 | other | downstream | 521064 | 1154410 ~ 1154700 (-) |
| G218265 | NA | other | downstream | 541746 | 1080288 ~ 1134018 (-) |
| mecom | LOC108278348,LOC108269179 | other | downstream | 572880 | 955480 ~ 1102884 (-) |
| scaf4b | LOC108411133 | other | upstream | 605187 | 2281401 ~ 2320915 (-) |
| gal3st2 | LOC108261785,LOC108277996 | other | upstream | 936643 | 2612857 ~ 2629901 (-) |
| G219642 | NA | other | upstream | 1211693 | 2887907 ~ 2963350 (-) |
| G219651 | NA | other | upstream | 1231112 | 2907326 ~ 2911165 (-) |
| igsf11 | igsf11 | other | upstream | 2051163 | 3727377 ~ 3807114 (-) |
