G218773


Basic Information

Item Value
gene id G218773
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 1777746 ~ 1786974 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU259189
GCCACGTTGCCCACTTTCTATTGTCCAaggtcagtgtgtttcagtttctctctctctctctcacacacacacacacacacacacacacacacacacacacacacttcaccagTGGGAGTATTAATTGAACAGTGGATAAGAGGATAAGAGcatcttctgtctctgtctcatactctttctattttctctctctctctctctcacacacacaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU259189 True 213 lncRNA 0.45 2 1777746 1786974

Neighbor

gene id symbol gene type direction distance location
fzd4 fzd4 coding downstream 87162 1682765 ~ 1690584 (-)
LOC113544557 parl coding downstream 180274 1592593 ~ 1597472 (-)
cldn15lb cldn1 coding downstream 189291 1581397 ~ 1588455 (-)
atg16l1 atg16l1,LOC107689588,LOC107551872 coding downstream 196717 1560569 ~ 1581029 (-)
sagb LOC108411842,LOC107756220,LOC107670108,LOC107689591,LOC107600819 coding downstream 219442 1546943 ~ 1558304 (-)
pdgfd pdgfd coding upstream 11706 1798680 ~ 1813081 (-)
gucy1a2 gucy1a2,LOC107706059,LOC107669873 coding upstream 136694 1923668 ~ 1946156 (-)
cwf19l2 cwf19l2 coding upstream 163007 1949981 ~ 1965960 (-)
trnag-ucc_22 NA coding upstream 182438 1969412 ~ 1969483 (-)
naalad2 folh1b,LOC107670141,LOC108412465 coding upstream 232334 2019308 ~ 2035377 (-)
G218768 NA non-coding downstream 7294 1770215 ~ 1770452 (-)
G218720 NA non-coding downstream 95659 1624484 ~ 1682087 (-)
G218734 NA non-coding downstream 101532 1675764 ~ 1676214 (-)
LOC117599072 NA non-coding downstream 160808 1603411 ~ 1616938 (-)
G218695 NA non-coding downstream 200535 1576881 ~ 1577211 (-)
G218825 NA non-coding upstream 130739 1917713 ~ 1918020 (-)
G218840 NA non-coding upstream 162304 1949278 ~ 1949551 (-)
G218850 NA non-coding upstream 191068 1978042 ~ 1980907 (-)
G218950 farsb non-coding upstream 440521 2227495 ~ 2266728 (-)
G218972 NA non-coding upstream 493279 2280253 ~ 2280779 (-)
trnag-ucc_18 NA other downstream 280335 1497340 ~ 1497411 (-)
trnag-ucc_17 NA other downstream 280640 1496879 ~ 1497106 (-)
G218302 nyap2 other downstream 623046 1154410 ~ 1154700 (-)
G218265 NA other downstream 643728 1080288 ~ 1134018 (-)
mecom LOC108278348,LOC108269179 other downstream 674862 955480 ~ 1102884 (-)
scaf4b LOC108411133 other upstream 494427 2281401 ~ 2320915 (-)
gal3st2 LOC108261785,LOC108277996 other upstream 825883 2612857 ~ 2629901 (-)
G219642 NA other upstream 1100933 2887907 ~ 2963350 (-)
G219651 NA other upstream 1120352 2907326 ~ 2911165 (-)
igsf11 igsf11 other upstream 1940403 3727377 ~ 3807114 (-)

Expression


Co-expression Network