G219642


Basic Information

Item Value
gene id G219642
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 2887907 ~ 2963350 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU260166
AAATGGCTGCCGAATAAACAATAGCTATTAAATagcaattttattataattttgatTTCTCTCTCAGAGGCTCAGAAACATCAGTGCATCCTCTgatttaaaaccattacaaagcGAACAAACGCTGATCATTCCAGGGAAAACATAGGATGAACCCAAAGACCAGAAATTAGCCCTGCTGTTCAGCAAACCCGTGACGGCAgctccaaaaaaaattaaaaatacccTCAGGTGACGTCGTTCCAGGTAAATCCAGCGAAGCTTTCATTTTCCAGACACTCGGCAATTATGACCATTAGCGTGGTTCTTGGTAATCCACTGAAACTTCTATTTTCGATACGGTAAACAAACAGGTGGACCCGAACAACCTGAAATCCAATAACGCTTCGTTTCACCAGACCCTGAGATCGTTTTCACACTGGAGCTCGTTTCCAGACTTGGGTCATTTGTCCCAGAGATTTCAGAGCGGTCCAGAGAACCGACCTTTGGTCGTCTTCGAAACGCTTTAACCGAAAACGACTTGTCACGTTACTTCCTGTGTCAAGGACTGCGATTGGTTGTTGTGATCTCGCTTTGGTGGTAACGGGGCTTGCAATGAGAACGTCTGCAAGGCAAAAAATCTTCCTGATAAGAGAGCAGCTTCCTCGATTGCAGGTCTTCCTGCACAATTATACTCTaagcatataaatatacaaacagaTCTGCTTCTAAATAATCCTTTATCCAGACACTGGCTACTGAAGTGGATCTGAGGAACCATCTGCTTCCAGGGTAACTGTTTTACTGTGAAACTGTCAAGGGTGTGGTGTTATTCTGGAAAGTTTTTAAATCTGACTGCTTTATTAAgagtaaatttttaaaaagacaataGCATGCAAACCTCTTTCCTCCCAACGGAAAGGAATCAAGTGGATCTGATCAAGCAtcagcttattaaaaaaatccaaaagacCATCCATTATCCTGATTTTGTGAATACAGGAGGATCTAAACAACAGGAGTTGAGATTTTCATTCTTTAGATGTATTTAATATCCATTTTGGTTATGAAGTGGAGAGAGCAAGACTGTGGGCAGAACTGAAACCAAACAAAGAGCAACAAGAACCTAATGGAGACCAAACgaagagcaaaacaaaaagcaaaacctGGTGGAGATGAAACAAAGAGCAGAAACAAGACCAAATGAAGTGCAGAACCTGAAGGAGACCAAACAAAGAGCCAAGGTGACCCTACATTCACGACTCATGTCACTTGTGGGTGTCCACCGTGGAGTGTTTTCTTTTAAGTTTTGATGAGAAACGGTAGTAGCTACTGCACACACAGCTattaaagctaactagttaaacctGACAGACACCAAACGAAGCGTGAAACCTGGTGCAGAGCAAACCAAAGCGaagagaacaaaacagaaaccaAACGAAGAGTAAAGAGAACCTGACGGAGACCAAAACCGATTCTTCGTAATCTCTATACACGTTTAATGACAGATTGCATGAGACAGCGCAAGATGAAAACCGCATTTATACGTTTTTCTTCCAGACAAACAGTAAATGGAAACTAATCGCAGGTAGGAACTGAAGTTGTGAGCGGAGGATTTGAAGAAACGTCACACCACACGCCATAAGACTGTTCCGAGGAAGCATTCGAGAtgattgtttggatttgtcactttatgGCTTCATAACTAAACTGcctagaattgagaaaatctgaaTTGAGACGCCGCTGGTCGCTGGAATCACGGCTCGGTGGAAAGCGAGCGGTCGGCTTTGTTTGCGTGAACGTCGGCTGTCACCGGTGATTCCTCGCAGCGGCTCCATTTCAGATTCGATGAGAAAACGAGTTGCACGAATCAGCTGTTTTCACACCGGCGATCCCTCAGATGCGCTGATCTTTCTTAGCACGGACTGTGCCAGCTGCGTGTCTGCCCACCAGACGCCCACACTATGCAAAAACCGTACACGcagtaagaaaaagaaaagggaaaaaaaaaggaagaaagaaagaggagaggagatacgcaatgacacagagagacacaggatCACAATCTCAGGATTAAATGGTGAGACAAATGCGTTTGGTGCAGTATACAGAACACAAGTGCacctcaaacaaacaaacaaacacacacacacacacaccactgagcccatgcaaacacactcccacatcttcatcatcatcatcaccatcatcaccactacTCCTAACACTTATTAAAGTGTACTGTTaaagaaaacagatttttgCCCATAACTAAGCTGTTAGTTTCTCAAATGCTTCTCAAATCTCTACATTTCCCAACAGGTTTCTGAAATTTCAGATATAATTCAactcaaaacacatttattttgctCAACTATGTGTTCATCGAGGCTAATTAAACAACTTCAGCTAGTTACATCCAGATAAGTTAACATTAGCTCATTATGCTAAAGAAGGAATAGTGCTCAGACTGTCATTCTGGACCACTGTTATTTACTCatattataacataatataatatataatatcaaTAAGGACCTCACACTAaagttgtgttgttgtttagaGACATTTCTGGGTTATTAGTGGCgctgacacacacacggctgATACCGTTACTTGGCGCTGGCTACAGGCTAAATGCTGCCTAGCGCTTACTTCATCACTTCGTCCGTCCTGTAACCGACATGTCAACCGAAATAATACTCTAAATTACAAGAAAttatggtaaataaataatttaacaattaCCACTGGAAAAAATAATCCAGCAAAAAGATACAGTGAGCTAATGGTGAGAGAAAAAGGCTACGAGTGAGCTAACTAGCTGTAGCTGTAGCATAGCATAGAGAGCGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU260166 True 2848 TUCP 0.41 2 2887907 2963350

Neighbor

gene id symbol gene type direction distance location
sidt2 sidt2 coding downstream 6614 2863388 ~ 2881293 (-)
paf1 paf1,LOC102790690 coding downstream 55894 2824607 ~ 2832013 (-)
LOC113544523 samd4b coding downstream 75727 2799782 ~ 2812180 (-)
LOC113544504 NA coding downstream 93389 2787772 ~ 2794518 (-)
psma6l psa6,LOC100701743,LOC102789735,LOC103033229,LOC105026880,LOC101155046,LOC106580837 coding downstream 109704 2772442 ~ 2778203 (-)
lsamp lsamp,LOC106612642,LOC106580806 coding upstream 69677 3033027 ~ 3690495 (-)
lrfn1 lrfn1,LOC108277437,LOC108440319,LOC107733400 coding upstream 957438 3920788 ~ 4072868 (-)
LOC117599095 NA coding upstream 1295813 4259163 ~ 4269047 (-)
LOC113544495 LOC108277689 coding upstream 1354641 4317991 ~ 4336898 (-)
LOC113544498 clcn2,LOC108411335,LOC103359445 coding upstream 1429426 4392776 ~ 4460707 (-)
LOC113544648 NA non-coding downstream 48665 2832700 ~ 2839242 (-)
G219609 NA non-coding downstream 88956 2798193 ~ 2798951 (-)
G219593 NA non-coding downstream 201977 2685089 ~ 2685930 (-)
G219576 NA non-coding downstream 275746 2611394 ~ 2612161 (-)
G218917 NA non-coding downstream 468416 2336752 ~ 2419491 (-)
G219678 NA non-coding upstream 6743 2970093 ~ 2991659 (-)
G219697 NA non-coding upstream 52566 3015916 ~ 3031001 (-)
LOC117599091 NA non-coding upstream 385013 3348363 ~ 3520487 (-)
G219836 NA non-coding upstream 624862 3588212 ~ 3588516 (-)
LOC113544520 NA non-coding upstream 857875 3821225 ~ 3825741 (-)
gal3st2 LOC108261785,LOC108277996 other downstream 258006 2612857 ~ 2629901 (-)
scaf4b LOC108411133 other downstream 566992 2281401 ~ 2320915 (-)
trnag-ucc_18 NA other downstream 1390496 1497340 ~ 1497411 (-)
trnag-ucc_17 NA other downstream 1390801 1496879 ~ 1497106 (-)
G218302 nyap2 other downstream 1733207 1154410 ~ 1154700 (-)
igsf11 igsf11 other upstream 764027 3727377 ~ 3807114 (-)
LOC113544484 NA other upstream 776932 3740282 ~ 3816835 (-)
LOC113544632 arap1 other upstream 1934600 4897950 ~ 4971519 (-)
nectin3a LOC108278241 other upstream 2587069 5550419 ~ 5599375 (-)
G220990 NA other upstream 2746748 5710098 ~ 5710891 (-)

Expression


Co-expression Network