Gene
RNA
| Item | Value |
|---|---|
| gene id | G219678 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047608.1 |
| NCBI id | CM018554.1 |
| chromosome length | 25848897 |
| location | 2970093 ~ 2991659 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU260205 | True | 408 | lncRNA | 0.47 | 2 | 2970093 | 2991659 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC113544469 | NA | coding | downstream | 16109 | 2946753 ~ 2953984 (-) |
| sidt2 | sidt2 | coding | downstream | 88800 | 2863388 ~ 2881293 (-) |
| paf1 | paf1,LOC102790690 | coding | downstream | 138080 | 2824607 ~ 2832013 (-) |
| LOC113544523 | samd4b | coding | downstream | 157913 | 2799782 ~ 2812180 (-) |
| LOC113544504 | NA | coding | downstream | 175575 | 2787772 ~ 2794518 (-) |
| lsamp | lsamp,LOC106612642,LOC106580806 | coding | upstream | 41368 | 3033027 ~ 3690495 (-) |
| lrfn1 | lrfn1,LOC108277437,LOC108440319,LOC107733400 | coding | upstream | 929129 | 3920788 ~ 4072868 (-) |
| LOC117599095 | NA | coding | upstream | 1267504 | 4259163 ~ 4269047 (-) |
| LOC113544495 | LOC108277689 | coding | upstream | 1326332 | 4317991 ~ 4336898 (-) |
| LOC113544498 | clcn2,LOC108411335,LOC103359445 | coding | upstream | 1401117 | 4392776 ~ 4460707 (-) |
| G219632 | NA | non-coding | downstream | 34024 | 2912680 ~ 2936069 (-) |
| LOC113544648 | NA | non-coding | downstream | 130851 | 2832700 ~ 2839242 (-) |
| G219609 | NA | non-coding | downstream | 171142 | 2798193 ~ 2798951 (-) |
| G219593 | NA | non-coding | downstream | 284163 | 2685089 ~ 2685930 (-) |
| G219576 | NA | non-coding | downstream | 357932 | 2611394 ~ 2612161 (-) |
| G219697 | NA | non-coding | upstream | 24257 | 3015916 ~ 3031001 (-) |
| LOC117599091 | NA | non-coding | upstream | 356704 | 3348363 ~ 3520487 (-) |
| G219836 | NA | non-coding | upstream | 596553 | 3588212 ~ 3588516 (-) |
| LOC113544520 | NA | non-coding | upstream | 829566 | 3821225 ~ 3825741 (-) |
| G220278 | NA | non-coding | upstream | 1289345 | 4281004 ~ 4325145 (-) |
| G219642 | NA | other | downstream | 6743 | 2887907 ~ 2963350 (-) |
| G219651 | NA | other | downstream | 58928 | 2907326 ~ 2911165 (-) |
| gal3st2 | LOC108261785,LOC108277996 | other | downstream | 340192 | 2612857 ~ 2629901 (-) |
| scaf4b | LOC108411133 | other | downstream | 649178 | 2281401 ~ 2320915 (-) |
| trnag-ucc_18 | NA | other | downstream | 1472682 | 1497340 ~ 1497411 (-) |
| igsf11 | igsf11 | other | upstream | 735718 | 3727377 ~ 3807114 (-) |
| LOC113544484 | NA | other | upstream | 748623 | 3740282 ~ 3816835 (-) |
| LOC113544632 | arap1 | other | upstream | 1906291 | 4897950 ~ 4971519 (-) |
| nectin3a | LOC108278241 | other | upstream | 2558760 | 5550419 ~ 5599375 (-) |
| G220990 | NA | other | upstream | 2718439 | 5710098 ~ 5710891 (-) |
