G219697


Basic Information

Item Value
gene id G219697
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 3015916 ~ 3031001 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU260229
tttgaaaacagacattgaaacttttttaaattttatttattttttttttccacaattgaACTCCTTTTAGATTCAAACTGGACATTGCACTCTCACGTGaacataggaaaaaaaaaggctgatttatttttttttttaattattttgttcgATTTTTCTCTTTCGTTTTCAACATCAGCTCAGGAATAATTCCAGTCGATATCATCAAACCGCCATTAACAACACCGAGGACATCGAGAAAGAAGCCACAACGTTTTGGTTACTCGTGACTGcgaggaggtttttttttttcccctctcaggAGGAAAATTTCCATGCAAATGAGTCGAATGGGTTCAAGCTATCCATGAAACGCTGGCCAAAACAATGCATCAGCAGAAAACACTGAAAGGGAATCATATAATACTTCTCCCTAATAAATAGCAGTGCACTATTACTACGGTAAATGGAAAaaggtaaatatatatatgtgtgtatgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggaatagCTAGAAATGCAAACCAGGGTCGAACGGGTTTGAGTCGAGTATGAAATTGCGTCTCCTGTCCCTTTTTGGTGACGTTGATGAACGTACAATGTTGTTTTCTCGCACGTTGACGAAGCAGTCACGTTCTTGCACGTTCACTGCTAGCTTGAGCCGCAAAGTTGCGTATGGAACCTCCCCAAGATGTAAGAAAATCATTTTGCCACACGAAAGAAAATATATAGGaccaaacaaattaaaactgaCTGTCTCCACAATCAGAGGGCAAAGAGCAACCGTTTAATTATCTGGTATCGTGTTACAACGGCGGTTCTCTTTAAGCGCTCTCGGCCTTGTCATCCTCCTTCGCCGCCTCTGAAACGCCGCCCTCTGCCTGCTCGGAGTCTTCTGCAGCATGGTTTGTCTTGCGTTTGGTTCACTTCGGCTTCACAATCAGCTGTCTCACTAGCAGTGGCAGGCACGTCGGCTTGTTTGGCTTCCgcctttttctcctcctccttttcttcctccttcttctccgCATCTACATTCTCAGCCTCGACTTCGGCATTTTCTGCTTCTTTAGGCTTCTCTGCTTCCTTTGGTTCCTCCTTCACATCCTGTTTAGGTTCTGAAGGGGAGGTGGCAGGAGCTTCAGCCTTGCTGTCCTCTGCTGCTGGAGAGTTAGTGGGACTTTTGGCCTTTTCCTCCTCCTTGGCAGCTTCGTCTTGTTTCTCCGCGGTGGGAGAAGCagctttctcctcctctttcttctctccctcATTTTCCTCAGCCTTGGCCTCAGCAGCAGGACTGTCCTCCTCCTTGTCATcatccttcatttttttccgGATTATGTGTCCGCGGAAGCTTGCCTGGATCTTGGTGGCAGCCTTGTGGGCTTTGTCTTCTGGTTTGGTGCCATCTTGCTTGATCTCCTGGTCAGCCTCTTCGGTCTTCTCCACGGCTTTGTTCTTCTTATACAGCACAGCATGCTTGTAGTATCCTTCCTTTATTTGCCGCCTTCTTCCCTTCTTCCCTTTTTTGCACTTCTCTCACACTCCCTCGCTCGCTCACGcgctctctcttgctctcgctctctctctcactgtctctctttctctctctctctctctctctcttgcgtgcacacacacacacacacacacacacacacactctcgggCTGTATCAACAGCTGAGGCGTCTGATGCTTTTAGTCATTACAGTCAGGcccaagcgcacacacacactacggcTGGTCGCTCGCTCTGAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU260229 True 1776 lncRNA 0.46 4 3015916 3031001

Neighbor

gene id symbol gene type direction distance location
LOC113544469 NA coding downstream 61932 2946753 ~ 2953984 (-)
sidt2 sidt2 coding downstream 134623 2863388 ~ 2881293 (-)
paf1 paf1,LOC102790690 coding downstream 183903 2824607 ~ 2832013 (-)
LOC113544523 samd4b coding downstream 203736 2799782 ~ 2812180 (-)
LOC113544504 NA coding downstream 221398 2787772 ~ 2794518 (-)
lsamp lsamp,LOC106612642,LOC106580806 coding upstream 2026 3033027 ~ 3690495 (-)
lrfn1 lrfn1,LOC108277437,LOC108440319,LOC107733400 coding upstream 889787 3920788 ~ 4072868 (-)
LOC117599095 NA coding upstream 1228162 4259163 ~ 4269047 (-)
LOC113544495 LOC108277689 coding upstream 1286990 4317991 ~ 4336898 (-)
LOC113544498 clcn2,LOC108411335,LOC103359445 coding upstream 1361775 4392776 ~ 4460707 (-)
G219678 NA non-coding downstream 24257 2970093 ~ 2991659 (-)
G219632 NA non-coding downstream 79847 2912680 ~ 2936069 (-)
LOC113544648 NA non-coding downstream 176674 2832700 ~ 2839242 (-)
G219609 NA non-coding downstream 216965 2798193 ~ 2798951 (-)
G219593 NA non-coding downstream 329986 2685089 ~ 2685930 (-)
LOC117599091 NA non-coding upstream 317362 3348363 ~ 3520487 (-)
G219836 NA non-coding upstream 557211 3588212 ~ 3588516 (-)
LOC113544520 NA non-coding upstream 790224 3821225 ~ 3825741 (-)
G220278 NA non-coding upstream 1250003 4281004 ~ 4325145 (-)
G220290 eif4g1 non-coding upstream 1273358 4304359 ~ 4305446 (-)
G219642 NA other downstream 52566 2887907 ~ 2963350 (-)
G219651 NA other downstream 104751 2907326 ~ 2911165 (-)
gal3st2 LOC108261785,LOC108277996 other downstream 386015 2612857 ~ 2629901 (-)
scaf4b LOC108411133 other downstream 695001 2281401 ~ 2320915 (-)
trnag-ucc_18 NA other downstream 1518505 1497340 ~ 1497411 (-)
igsf11 igsf11 other upstream 696376 3727377 ~ 3807114 (-)
LOC113544484 NA other upstream 709281 3740282 ~ 3816835 (-)
LOC113544632 arap1 other upstream 1866949 4897950 ~ 4971519 (-)
nectin3a LOC108278241 other upstream 2519418 5550419 ~ 5599375 (-)
G220990 NA other upstream 2679097 5710098 ~ 5710891 (-)

Expression


Co-expression Network