Gene
RNA
| Item | Value |
|---|---|
| gene id | G219836 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047608.1 |
| NCBI id | CM018554.1 |
| chromosome length | 25848897 |
| location | 3588212 ~ 3588516 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| id | description |
|---|---|
| ko04974 | Protein digestion and absorption |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU260371 | True | 209 | lncRNA | 0.43 | 2 | 3588212 | 3588516 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC113544469 | NA | coding | downstream | 634228 | 2946753 ~ 2953984 (-) |
| sidt2 | sidt2 | coding | downstream | 706919 | 2863388 ~ 2881293 (-) |
| paf1 | paf1,LOC102790690 | coding | downstream | 756199 | 2824607 ~ 2832013 (-) |
| LOC113544523 | samd4b | coding | downstream | 776032 | 2799782 ~ 2812180 (-) |
| LOC113544504 | NA | coding | downstream | 793694 | 2787772 ~ 2794518 (-) |
| lrfn1 | lrfn1,LOC108277437,LOC108440319,LOC107733400 | coding | upstream | 332272 | 3920788 ~ 4072868 (-) |
| LOC117599095 | NA | coding | upstream | 670647 | 4259163 ~ 4269047 (-) |
| LOC113544495 | LOC108277689 | coding | upstream | 729475 | 4317991 ~ 4336898 (-) |
| LOC113544498 | clcn2,LOC108411335,LOC103359445 | coding | upstream | 804260 | 4392776 ~ 4460707 (-) |
| chrd | chrd | coding | upstream | 892031 | 4480547 ~ 4491680 (-) |
| LOC117599091 | NA | non-coding | downstream | 67725 | 3348363 ~ 3520487 (-) |
| G219697 | NA | non-coding | downstream | 557211 | 3015916 ~ 3031001 (-) |
| G219678 | NA | non-coding | downstream | 596553 | 2970093 ~ 2991659 (-) |
| G219632 | NA | non-coding | downstream | 652143 | 2912680 ~ 2936069 (-) |
| LOC113544648 | NA | non-coding | downstream | 748970 | 2832700 ~ 2839242 (-) |
| LOC113544520 | NA | non-coding | upstream | 232709 | 3821225 ~ 3825741 (-) |
| G220278 | NA | non-coding | upstream | 692488 | 4281004 ~ 4325145 (-) |
| G220290 | eif4g1 | non-coding | upstream | 715843 | 4304359 ~ 4305446 (-) |
| G220266 | NA | non-coding | upstream | 726350 | 4314866 ~ 4317621 (-) |
| G220267 | NA | non-coding | upstream | 800756 | 4389272 ~ 4392236 (-) |
| G219642 | NA | other | downstream | 624862 | 2887907 ~ 2963350 (-) |
| G219651 | NA | other | downstream | 677047 | 2907326 ~ 2911165 (-) |
| gal3st2 | LOC108261785,LOC108277996 | other | downstream | 958311 | 2612857 ~ 2629901 (-) |
| scaf4b | LOC108411133 | other | downstream | 1267297 | 2281401 ~ 2320915 (-) |
| trnag-ucc_18 | NA | other | downstream | 2090801 | 1497340 ~ 1497411 (-) |
| igsf11 | igsf11 | other | upstream | 138861 | 3727377 ~ 3807114 (-) |
| LOC113544484 | NA | other | upstream | 151766 | 3740282 ~ 3816835 (-) |
| LOC113544632 | arap1 | other | upstream | 1309434 | 4897950 ~ 4971519 (-) |
| nectin3a | LOC108278241 | other | upstream | 1961903 | 5550419 ~ 5599375 (-) |
| G220990 | NA | other | upstream | 2121582 | 5710098 ~ 5710891 (-) |
