igsf11 (igsf11)


Basic Information

Item Value
gene id igsf11
gene name igsf11
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 3727377 ~ 3807114 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU260463
TCGGACGCCGCGCGCCTCTCAGCATAGCAGACCCGGAGCTCGCGCGCTCAGGACGCACGGCCATGCACTGTCTCGCACTCTCACCCGGAGCTCGCGCGCGGGGTTTCCTCCGGTTTCTCGCGGTGGTGTgaataacagtaacaataacaataataataataataataataataataataataataataataataataataataatggccaTCTGGGAATCAGGAGGACGGCGTACGTGGTTTTGGGAACGTTTTGGAGAACATTTGGAATGTTTCCTTAATTAAGCGATCTGCAACATGCATGTGCATCTCAACTGCACAATAATGTCAATTTTCAGCCGCCATTTTTAGAACATTTAAGCTTAGCAACACTATGTTTTGCTGTTGACTCGGGCCATCTTTTCAGATCGAAGCAATAGTTAGAAAATTTTACCGTAAAACACCTAAAATGATCTAatttattagcaatataaacaCAGTGGAGTTCCAAAAATCCATATGTACAGCTGGGAGTGTAAATAAGAGATGGGAAAAAATGGGAcgtaaatgaaataaacttttGATTTTAGTTGCTTttgatttacaaacattttgaatacatttattttgcaattgtttattttttcagtaatttcttctgatttttttgtttgtttcttcctttttaGGTTTTTTGGACAATAAGTtgtgacaaaatacaaaaagcaTCCAGCCAAATTTTGTCTAGTTAAaagttttataataattagCATTAGTTTAAGTGTAAAGATTACAAGGTTGATGTTAGCATTGGATGCATGGCTAGCATTCGTATATTTCACAACATCATAAATTCGTAAATTGAACGAAACTCAACCGTTTCACTCTCACTTGTTAAAATATGCCTGAATTTGCAAGTTGGAAATGATAGCTTCATTGTGTAAGTGGCATTGTTGTAACCAGGGagctttatttcaaataatgttttttgaCTACCCTTAAAACTGTAAACCAGACACACAGATCGGCGTAGTATACGTCCTTTTTTACAAACTTTAGCTACTTAAAATTGTAGCATAGATTTTCACGAAGTCGAGTTTAAAATCATAAGATGAATTTAGTGAGTCCAAGTGAAgccaaaaatcacaaaaaattaCTTAAGTTGGATTTAAGGCCACGTCCAAGACCTGACAACCTTCACGCATTTTACGTACGAACTCCGCAAATATAAAGTAACGTAacttttttctaataaaaatcataaaaatgaataaaaatagcaaataaatcaattaccatattaatctggaatgattgacagctgcgtAAGGGTTTTGAACTGTCAATATTAACTAAGCCCCAGAAGCCCCGCCCTCTTCTCATTCACCTCACATGCTTTCAGTAGGATTTGCGAGGCgttctcgctttctgtcacggcaaatggagaatgttttgagcttgttaatatgaaagaaaatctagcagtgtgtgttccacttagctaacattatacaGGTATATAGCTAATGTcagttaaatataattaattctGCGAAAATATTTAGcccgaaaaaaaaaaggttccaacTGAAAGAGCTAGCATTTACATTTGAACTAAAACAGACAAGCAGCAGCTTTACAGTTACTGTGGTTACCGTAAAACACCGTATATAGACACACTGTTTCTACCTTACACAGCTGATTTGTAGAAGGATGATATCGCAAACTACGAATGTCAACtactatgatttttttcctcttcgtGTAAGTGACGTATGACTGCAAAAAATGTTACGTTAGGGCACCATGCAGTTTATCGATAAAGCTATAGACACATAGCTTTTATTTGTCAGATCATTAATTTGACGCTAATAAAATTACTGGATTTTTTTCCATTCCATGATGTTCCGAGAATTCATGGTGTAGCATAGCTatcataaaaacactgaaaaacggGCATGCTAGAATAATGATAAGcgaaaaaaataaggaaattgTTGTGAATTGGTTAGAAGTTACAACCTTAGCATCTTAActctgtttatattattttcaagAGAATAGGAcaatttttcaacaaaaaataaataaataaaaagacaatttATAATGTATTGGTCACTTCTTATAGTCCAAAAAATATggtaatatgatttttttaaaaaaaaaaaaaaagtgattcattttaaaaataagaaattcaGCAATTTTCTTgttggattttttgtttttatttaaaatttttgattttatatatatattttttgtattattctaCTGTTTTGAACCCATACAGAAGATTAAGGGTTAAGTTGAAGAAAAATATGAACACTAAAATGACAGTTTAAGATGCCTCCTCAGTAaccacatttataaaaaaaaaaataataaaaatctgtctTTGCACTGCAGTATTATTTTCCTCACTTTCTTGATCCGTCTTAATCCTTTTTTAATTTGAGTCTTATTGAGTGCCGAGTCTCTAATTCAACACTACTGATAAGCCTAGCCATAGCCTACCTCTAAAATAACTTGAAATAAAATAGCGTATGCTTAGATCGTTTtaataatcactttttttctttgtgacaTGACAGAATCTGAAAATATGAGAAAGCATCAATAACAATGAACTAATGAGAgtgtaaatcaaatcaaaaccCAGTGCAGTGTTAGGTGCTACATTGAGGCGTATGAGACTGTACACTGATTCTACTgtaagaaatttttaaaaagttaatctttattgatgatttttttgattgattgtttattg
>XM_026943329.2
TCTCAGCATAGCAGACCCGGAGCTCGCGCGCTCAGGACGCACGGCCATGCACTGTCTCGCACTCTCACCCGGAGCTCGCGCGCGGGGTTTCCTCCGGTTTCTCGCGGTGGTGTgaataacagtaacaataacaataataataattattataataaataataaatagttcaTCCTGCGGCGGACATGCGCGGAGCAaacggagcaaaaataaaagaagctgCAGACAAAAGGAGGAGAATGTCAGTAATCCGGTAGAGACGGAATGCAAAGAAAGAAGAGCGCGTGGAGATAAGTGGCGCAGAAATGCAGCGgtttgatattttctttttgGTCCTAGAATGAAAAAATAGTGTTATCTGACAAAGACTTGATTCATGCATTGTGAGTCATTTCCAACCAAGAAACTCTGGAAGCAAGAATTAATCAAATAACATtctaaagaaatacagaaagagatCAAATCCTGGGACGATGCTGAGCACCCACAATTTATGGATTGCATGGCTCGCGCTCTTGTGCATGGAAGtgtgtgtgcgctcgcTGGAGGTGACGGTCAGCCAGAGCAGTGTGCAGGTAGCCAGAGGCCAAGCGGCCATCTTGCCCTGCACCTTCACCACCAGCGCCGCCCTCAACAATCTGTACATCATCTGGATGGTTACACCGCTGTCCAACGCCAACCAACCTGAGCAGGTGATTATCTATCAGAGTGGTCAGGTCTTCAGCCTCGCTAACCGTATGAACAATCGTGTGGGTTTTGTGGCCACGATGCCCAGCACCAGCGCCTCCATCTTCATCAACAACACACAGCTGGCGGACACGGGGACATACCAGTGCCTCGTCAACAACCTGCCCGACCGCGGGGGGCGAAACATCGGCGTCATCGGCCTCACCGTGCTCGtccCTCCATCTTTGCCCGTGTGTCGTATTCAGGGTTCTCTCGATGTCGGCAGTGATGTCACACTGCTCTGTGGTTCTGAAGAGGGAATTCCGACACCAACGTACTCATGGGAGAAACTGGACTCGATTCCCAAACTCCCTCTCGGTGCCATGCtagATCAGATGCAGGGCACGGTGAGTCTGAAGAACATCAGCGTGGGGACATCTGGTGTGTATCAGTGCACCGCCTCCAACGCCATCGGCACCAGCACGTGTCAGCTCAACCTGCAGGTGGTGACACCTCAGCCCCAGAGCGTCGGTCTCATCGCTGGAACCATCGTCTCTGGCGTCCTTGCGGTGGTGATTTTCGCCCTGCTGGTGATTGTTACGCTTTTCTACTGGAGGAACAAAAACCGCTACGAAGACGACGACATCCCCAACGAAATCAGAGAGGACGATCTTCCGCCAAAGAGGTCATCATCGGTGAAGGCGTTCCAGGCGGACGCCTCGTCCTCGGAGAACGACACACTCACCTCCACCAACACCTACAACAGCCGCTACTGGCACAACGCCAAAGCCAGCTATGACGCCAACTCCTACACTCGCTACGACGGGCAAAGCTTCACAACTGGGGGCGGGACTGGTGCTGGAGGGGGTGGGGCCTACGCAAATGGTGGGCACACTCTCCCAGCTCCCAAAACTCTGGTGGTCACCGCCAATTCTGCGCCCATTGTGACGCGCAGCAACGGTACACTGAGTCAGCGAGCTCCACCAGCCACGCCCCCACCTACTTCTGGCTCCGCCCACACACACGCGCCGAGCCGCACACACTCGTACGCCGTTAGCCAGGCGGCGCTGGAGCGCATGGGTGCCGTGCCCGTCATGGTTCCCGCTCAGAGCCGGGCGGGTTCTCTCGTCTAACGCCAACACGAGATGGACAAACTGAATTTTTACGAATCTTTATACAAATGAtgccatctcttttttttccactaatgAACTACTGATTTTACTGcgtgaggttttttttctacattagcgaatttgcaataataataataataataataataataataataataataataatggccaTCTGGGAATCAGGAGGACGGCGTACGTGGTTTTGGGAACGTTTTGGAGAACATTTGGAATGTTTCCTTAATTAAGCGATCTGCAACATGCATGTGCATCTCAACTGCACAATAATGTCAATTTTCAGCCGCCATTTTTAGAACATTTAAGCTTAGCAACACTATGTTTTGCTGTTGACTCGGGCCATCTTTTCAGATCGAAGCAATAGTTAGAAAATTTTACCGTAAAACACCTAAAATGATCTAatttattagcaatataaacaCAGTGGAGTTCCAAAAATCCATATGTACAGCTGGGAGTGTAAATAAGAGATGGGAAAAAATGGGAcgtaaatgaaataaacttttGATTTTAGTTGCTTttgatttacaaacattttgaatacatttattttgcaattgtttattttttcagtaatttcttctgatttttttgtttgtttcttcctttttaGGTTTTTTGGACAATAAGTtgtgacaaaatacaaaaagcaTCCAGCCAAATTTTGTCTAGTTAAaagttttataataattagCATTAGTTTAAGTGTAAAGATTACAAGGTTGATGTTAGCATTGGATGCATGGCTAGCATTCGTATATTTCACAACATCATAAATTCGTAAATTGAACGAAACTCAACCGTTTCACTCTCACTTGTTAAAATATGCCTGAATTTGCAAGTTGGAAATGATAGCTTCATTGTGTAAGTGGCATTGTTGTAACCAGGGagctttatttcaaataatgttttttgaCTACCCTTAAAACTGTAAACCAGACACACAGATCGGCGTAGTATACGTCCTTTTTTACAAACTTTAGCTACTTAAAATTGTAGCATAGATTTTCACGAAGTCGAGTTTAAAATCATAAGATGAATTTAGTGAGTCCAAGTGAAgccaaaaatcacaaaaaattaCTTAAGTTGGATTTAAGGCCACGTCCAAGACCTGACAACCTTCACGCATTTTACGTACGAACTCCGCAAATATAAAGTAACGTAacttttttctaataaaaatcataaaaatgaataaaaatagcaaataaatcaattaccatattaatctggaatgattgacagctgcgtAAGGGTTTTGAACTGTCAATATTAACTAAGCCCCAGAAGCCCCGCCCTCTTCTCATTCACCTCACATGCTTTCAGTAGGATTTGCGAGGCgttctcgctttctgtcacggcaaatggagaatgttttgagcttgttaatatgaaagaaaatctagcagtgtgtgttccacttagctaacattatacaGGTATATAGCTAATGTcagttaaatataattaattctGCGAAAATATTTAGcccgaaaaaaaaaaggttccaacTGAAAGAGCTAGCATTTACATTTGAACTAAAACAGACAAGCAGCAGCTTTACAGTTACTGTGGTTACCGTAAAACACCGTATATAGACACACTGTTTCTACCTTACACAGCTGATTTGTAGAAGGATGATATCGCAAACTACGAATGTCAACtactatgatttttttcctcttcgtGTAAGTGACGTATGACTGCAAAAAATGTTACGTTAGGGCACCATGCAGTTTATCGATAAAGCTATAGACACATAGCTTTTATTTGTCAGATCATTAATTTGACGCTAATAAAATTACTGGATTTTTTTCCATTCCATGATGTTCCGAGAATTCATGGTGTAGCATAGCTatcataaaaacactgaaaaacggGCATGCTAGAATAATGATAAGcgaaaaaaataaggaaattgTTGTGAATTGGTTAGAAGTTACAACCTTAGCATCTTAActctgtttatattattttcaagAGAATAGGAcaatttttcaacaaaaaataaataaataaaaagacaatttATAATGTATTGGTCACTTCTTATAGTCCAAAAAATATggtaatatgatttttttaaaaaaaaaaaaaaagtgattcattttaaaaataagaaattcaGCAATTTTCTTgttggattttttgtttttatttaaaatttttgattttatatatatattttttgtattattctaCTGTTTTGAACCCATACAGAAGATTAAGGGTTAAGTTGAAGAAAAATATGAACACTAAAATGACAGTTTAAGATGCCTCCTCAGTAaccacatttataaaaaaaaaaataataaaaatctgtctTTGCACTGCAGTATTATTTTCCTCACTTTCTTGATCCGTCTTAATCCTTTTTTAATTTGAGTCTTATTGAGTGCCGAGTCTCTAATTCAACACTACTGATAAGCCTAGCCATAGCCTACCTCTAAAATAACTTGAAATAAAATAGCGTATGCTTAGATCG

Function

symbol description
igsf11 Acts upstream of or within late stripe melanocyte differentiation and melanocyte migration. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including eye; gonad; heart; integument; and vertical myoseptum. Orthologous to human IGSF11 (immunoglobulin superfamily member 11).

NR:

description
PREDICTED: immunoglobulin superfamily member 11 isoform X1

GO:

id name namespace
GO:0097324 melanocyte migration biological_process
GO:0050934 late stripe melanocyte differentiation biological_process

KEGG:

id description
K06791 IGSF11; immunoglobulin superfamily, member 11

RNA

RNA id representative length rna type GC content exon number start site end site
TU260463 False 2754 lncRNA 0.33 2 3727377 3807114
XM_026943329.2 True 4303 mRNA 0.41 7 3727592 3807098

Neighbor

gene id symbol gene type direction distance location
lsamp lsamp,LOC106612642,LOC106580806 coding downstream 36882 3033027 ~ 3690495 (-)
LOC113544469 NA coding downstream 773393 2946753 ~ 2953984 (-)
sidt2 sidt2 coding downstream 846084 2863388 ~ 2881293 (-)
paf1 paf1,LOC102790690 coding downstream 895364 2824607 ~ 2832013 (-)
LOC113544523 samd4b coding downstream 915197 2799782 ~ 2812180 (-)
lrfn1 lrfn1,LOC108277437,LOC108440319,LOC107733400 coding upstream 113674 3920788 ~ 4072868 (-)
LOC117599095 NA coding upstream 452049 4259163 ~ 4269047 (-)
LOC113544495 LOC108277689 coding upstream 510877 4317991 ~ 4336898 (-)
LOC113544498 clcn2,LOC108411335,LOC103359445 coding upstream 585662 4392776 ~ 4460707 (-)
chrd chrd coding upstream 673433 4480547 ~ 4491680 (-)
G219836 NA non-coding downstream 138861 3588212 ~ 3588516 (-)
LOC117599091 NA non-coding downstream 206890 3348363 ~ 3520487 (-)
G219697 NA non-coding downstream 696376 3015916 ~ 3031001 (-)
G219678 NA non-coding downstream 735718 2970093 ~ 2991659 (-)
G219632 NA non-coding downstream 791308 2912680 ~ 2936069 (-)
LOC113544520 NA non-coding upstream 14111 3821225 ~ 3825741 (-)
G220278 NA non-coding upstream 473890 4281004 ~ 4325145 (-)
G220290 eif4g1 non-coding upstream 497245 4304359 ~ 4305446 (-)
G220266 NA non-coding upstream 507752 4314866 ~ 4317621 (-)
G220267 NA non-coding upstream 582158 4389272 ~ 4392236 (-)
G219642 NA other downstream 764027 2887907 ~ 2963350 (-)
G219651 NA other downstream 816212 2907326 ~ 2911165 (-)
gal3st2 LOC108261785,LOC108277996 other downstream 1097476 2612857 ~ 2629901 (-)
scaf4b LOC108411133 other downstream 1406462 2281401 ~ 2320915 (-)
trnag-ucc_18 NA other downstream 2229966 1497340 ~ 1497411 (-)
LOC113544632 arap1 other upstream 1090836 4897950 ~ 4971519 (-)
nectin3a LOC108278241 other upstream 1743305 5550419 ~ 5599375 (-)
G220990 NA other upstream 1902984 5710098 ~ 5710891 (-)
LOC113532612 LOC108277970 other upstream 1990814 5797928 ~ 5803973 (-)
dynll2a dynll2a,LOC107554284 other upstream 2214031 6021145 ~ 6024353 (-)

Expression


Co-expression Network