LOC113544484


Basic Information

Item Value
gene id LOC113544484
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 3740282 ~ 3816835 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU260466
TGCGGTCTCTGTTTATTTCCGcatgtccatgtccatgttCGGATCTTCTCTTTACTTCTGCACTTCACTTTACCGAGGAAGCGTCTCTGAGCTCACGGGGGAACCATGGACTTCGATTTGGCTGcagCTGTGAATAAGGACGAAGTGAAGAAGAGTGACGCAAATAAAGTCGAGGGAATCTTTGGATTTGGAAAGAAGGATAAAGACAAGGACAAGGAAAAATGTAAAGACAAGGACAAAAGCAAAGAGCATAAAAAACACAAGGAGCACAAGAAGCCTAAAGAGCATAAgaagcctaaagagcacaagaagcctaaagagcacaaggGGCATGGAGGACACagctcctcatcctcatcctccagcGATGATGATTAGgaaCACCgctggactgaagaaggaatttctttctttccttctttcttttctcccagTAAAATAATTCATGATTTAAAGCTGTTTCTAATTATAATGATgc
>TU260467
TGCGGTCTCTGTTTATTTCCGcatgtccatgtccatgttCGGATCTTCTCTTTACTTCTGCACTTCACTTTACCGAGGAAGCGTCTCTGAGCTCACGGGGGAACCATGGCAGCTGTGAATAAGGACGAAGTGAAGAAGAGTGACGCAAATAAAGTCGAGGGAATCTTTGGATTTGGAAAGAAGGATAAAGACAAGGACAAGGAAAAATGTAAAGACAAGGACAAAAGCAAAGAGCATAAAAAACACAAGGAGCACAAGAAGCCTAAAGAGCATAAgaagcctaaagagcacaagaagcctaaagagcacaaggGGCATGGAGGACACagctcctcatcctcatcctccagcGATGATGATTAGgaaCACCgctggactgaagaaggaatttctttctttccttctttcttttctcccagTAAAATAATTCATGATTTAAAGCTGTTTCTAATTATAATGATgc
>TU260468
TGCGGTCTCTGTTTATTTCCGcatgtccatgtccatgttCGGATCTTCTCTTTACTTCTGCACTTCACTTTACCGAGGAAGCGTCTCTGAGCTCACGGGGGAACCATGGCAGCTGTGAATAAGGACGAAGTGAAGAAGAGTGACGCAAATAAAGTCGAGGGAATCTTTGGATTTGGAAAGAAGGATAAAGACAAGGACAAGGAAAAATGTAAAGACAAGGACAAAAGCAAAGAGCATAAAAAACACAAGGAGCACAAGAAGCCTAAAGAGCATAAgaagcctaaagagcacaagaagcctaaagagcacaaggGGCATGGAGGACACagctcctcatcctcatcctccagcGATGATGATTAGgaaCACCgctggactgaagaaggaatttctttctttctttctttctttctttctttcctctctt
>XM_026943316.2
GTATAAAGGTGTACTCGTGCACCAGgtgatttggaacacagcctcGGGTGCGGTCTCTGTTTATTTCCGcatgtccatgtccatgttCGGATCTTCTCTTTACTTCTGCACTTCACTTTACCGAGGAAGCGTCTCTGAGCTCACGGGGGAACCATGGACTTCGATTTGGCTGcagCTGTGAATAAGGACGAAGTGAAGAAGAGTGACGCAAATAAAGTCGAGGGAATCTTTGGATTTGGAAAGAAGGATAAAGACAAGGACAAGGAAAAATGTAAAGACAAGGACAAAAGCAAAGAGCATAAAAAACACAAGGAGCACAAGAAGCCTAAAGAGCATAAgaagcctaaagagcacaagaagcctaaagagcacaaggGGCATGGAGGACACagctcctcatcctcatcctccagcGATGATGATTAGgaaCACCgctggactgaagaaggaatttctttctttccttctttcttttctcccagTAAAATAATTCATGATTTAAAGCTGTTTCTAATTATAATGATgcaatgtaattaaaaacaataaatacatgtaaaagtaa
>XM_026943317.2
CCAGgtgatttggaacacagcctcGGGTGCGGTCTCTGTTTATTTCCGcatgtccatgtccatgttCGGATCTTCTCTTTACTTCTGCACTTCACTTTACCGAGGAAGCGTCTCTGAGCTCACGGGGGAACCATGGCAGCTGTGAATAAGGACGAAGTGAAGAAGAGTGACGCAAATAAAGTCGAGGGAATCTTTGGATTTGGAAAGAAGGATAAAGACAAGGACAAGGAAAAATGTAAAGACAAGGACAAAAGCAAAGAGCATAAAAAACACAAGGAGCACAAGAAGCCTAAAGAGCATAAgaagcctaaagagcacaagaagcctaaagagcacaaggGGCATGGAGGACACagctcctcatcctcatcctccagcGATGATGATTAGgaaCACCgctggactgaagaaggaatttctttctttccttctttcttttctcccagTAAAATAATTCATGATTTAAAGCTGTTTCTAATTATAATGATgcaatgtaattaaaaacaataaatacatgtaaaagtaa

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0030163 protein catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU260466 False 478 TUCP 0.43 4 3811560 3816787
TU260467 False 463 TUCP 0.43 4 3811560 3816787
TU260468 False 427 TUCP 0.44 5 3740282 3816787
XM_026943316.2 True 562 mRNA 0.42 4 3811524 3816835
XM_026943317.2 False 526 mRNA 0.41 4 3811524 3816814

Neighbor

gene id symbol gene type direction distance location
lsamp lsamp,LOC106612642,LOC106580806 coding downstream 49787 3033027 ~ 3690495 (-)
LOC113544469 NA coding downstream 786298 2946753 ~ 2953984 (-)
sidt2 sidt2 coding downstream 858989 2863388 ~ 2881293 (-)
paf1 paf1,LOC102790690 coding downstream 908269 2824607 ~ 2832013 (-)
LOC113544523 samd4b coding downstream 928102 2799782 ~ 2812180 (-)
lrfn1 lrfn1,LOC108277437,LOC108440319,LOC107733400 coding upstream 103953 3920788 ~ 4072868 (-)
LOC117599095 NA coding upstream 442328 4259163 ~ 4269047 (-)
LOC113544495 LOC108277689 coding upstream 501156 4317991 ~ 4336898 (-)
LOC113544498 clcn2,LOC108411335,LOC103359445 coding upstream 575941 4392776 ~ 4460707 (-)
chrd chrd coding upstream 663712 4480547 ~ 4491680 (-)
G219836 NA non-coding downstream 151766 3588212 ~ 3588516 (-)
LOC117599091 NA non-coding downstream 219795 3348363 ~ 3520487 (-)
G219697 NA non-coding downstream 709281 3015916 ~ 3031001 (-)
G219678 NA non-coding downstream 748623 2970093 ~ 2991659 (-)
G219632 NA non-coding downstream 804213 2912680 ~ 2936069 (-)
LOC113544520 NA non-coding upstream 4390 3821225 ~ 3825741 (-)
G220278 NA non-coding upstream 464169 4281004 ~ 4325145 (-)
G220290 eif4g1 non-coding upstream 487524 4304359 ~ 4305446 (-)
G220266 NA non-coding upstream 498031 4314866 ~ 4317621 (-)
G220267 NA non-coding upstream 572437 4389272 ~ 4392236 (-)
G219642 NA other downstream 776932 2887907 ~ 2963350 (-)
G219651 NA other downstream 829117 2907326 ~ 2911165 (-)
gal3st2 LOC108261785,LOC108277996 other downstream 1110381 2612857 ~ 2629901 (-)
scaf4b LOC108411133 other downstream 1419367 2281401 ~ 2320915 (-)
trnag-ucc_18 NA other downstream 2242871 1497340 ~ 1497411 (-)
LOC113544632 arap1 other upstream 1081115 4897950 ~ 4971519 (-)
nectin3a LOC108278241 other upstream 1733584 5550419 ~ 5599375 (-)
G220990 NA other upstream 1893263 5710098 ~ 5710891 (-)
LOC113532612 LOC108277970 other upstream 1981093 5797928 ~ 5803973 (-)
dynll2a dynll2a,LOC107554284 other upstream 2204310 6021145 ~ 6024353 (-)

Expression


Co-expression Network