G220266


Basic Information

Item Value
gene id G220266
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 4314866 ~ 4317621 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU260836
catcagtaaagttagcatttttttttattactgaaaagtttaaacaaaaacaatcaaaaaactaaatatttacaGGACTCTCCTGAAATGCGTTATGGTAGCTTTTCACACTATTTGTACTATTTCTGTCTTccgttttttattttatttatttatttaacacttttgcCTTTTTTATAGTCAATATCTTAGTcaatcaattatttttttctaagttTTAGTATtgattgtattttataaaatgcactACAGGATTCACACAGATTCAGTAAACCAGctttttttgtcctcttttttttgtcttttttttttttaaacaagtggACAAAAGTTAATTCAGACAAGTTGAGGGTGGCGGTTAGTGTAACTCCACcccctcagcagcagcagcagcagcagcaaaaaaaGATCAAAGTTCACCCTCCATCTCCTTTTTTGCATCACGCAGAGCTGTCAGGAAGCAGTTCATTCCCCCTTTTAAACCACCCAATCACAGCCCtggattttccttttttttgtcctgtttaacAAACTCATTGGAGgggagaaaaggggaaaaaaatcaacacagcACTTCATTCTCCAGCCCAGAGTAAAGAGTTTCTCTCAACATGACACTTCGAAGAGTTTCAAAAAAATATAGAGCTCTCAGCAGCTTTTGATAAATCACACTGTTGTAGCGACACATCATAGGCaaagtgtgtgagtttagtgaCACCAAGCTGATGTCAACAACTACTGAAACGATAATGGAACAAGATCTCCAGACTTCTTTATCCTCTCGGTGAATTGTGAAATTTTTATAAATCAACAGTTTCGGCTCAAAAAAACATTCGCTAGCATAAAACAaaagaaggaaacaaaaaaaaaaaaaaacacgatcCAAAGTTCAAATTTTTATCCATCCACTTtgaaaactgcagcttgtttcAACTCCAGGAAATTTGTGAAATTGTGAAAGGAGCGAGGAGGGCTTTAGCTGTTGTCTGATTCGTCCTCGGCTTCACGGAGCCAAGTGAAAAAAGCAGTGACTGATTTGAGGGCGACGCCCTTTCCTTGCTGCTCAGCTGGATCTTTGCTCGACTCCCACTTGTAGAAGCCGTCCTCCTTAATGATGTCCTCGTCATAGAGCACGTCGAAAAACATCCGCAACTTGGCGGCTGCTCCATCTGCACCATGAGGCTCTGTAACGCGTAGAGCGCCTGCAGCTCCTTCTGCTCAGTATTAATGTAGCGCTGGAGCAGCTTGGCCCTCTGGGAAATCTCTTTAGTATCCACTTTATACGGTGTTTCACCTGTTTGCAGGAAAAGAAAGACAGTCAGGAGGTTTTCTGTGTGTTACTAAACCGGCtagaaaaaaaggatttattACGCAACTCACAAATGATAGCAGCCTGACACACGGAGGTCATCAGAGCTCGCACAAAGGTGTTCGATGAAGCCTGCTGCTCGTCCAGGTTCGCCTGATAAACGGCAAAGTTACATCAGTggtgtgtttaaaaaacaaacacacgcgcgcgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacagtagtacCTCCACCCAGTTGTATATGCGCTGGTTGTCAGATTTGTCCTGCAGCAGTTGGtccagctgtttggacatctcTTCCACGCTCAGAGATTTCCTACTGCTACCAAatttcacacactcctcacccAGCGTGTAGTCCACTCCCtaaacacacacgtgcacacacacacagacacacccacctcttttttaattgttttatttgttcagtTCACTACTTGTCCAGTTATACATTATTGGGTTATGAAGACATGAGGAAGTGAAGAACGACAGAAGAAATGAGAGGATgagcagagagaggaagtgagggagtgagggagtgagcgAAGTGATGAGGAAGTGATTTTTGATCAAACCTTCTCAGTCACAAACTTGTTGACATCTTCATCCGCAGACAGGAAGTCTTTCCAGCTAAGCCCCGCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU260836 True 2005 lncRNA 0.42 2 4314866 4317621

Neighbor

gene id symbol gene type direction distance location
LOC117599095 NA coding downstream 45819 4259163 ~ 4269047 (-)
lrfn1 lrfn1,LOC108277437,LOC108440319,LOC107733400 coding downstream 241998 3920788 ~ 4072868 (-)
lsamp lsamp,LOC106612642,LOC106580806 coding downstream 624371 3033027 ~ 3690495 (-)
LOC113544469 NA coding downstream 1360882 2946753 ~ 2953984 (-)
sidt2 sidt2 coding downstream 1433573 2863388 ~ 2881293 (-)
LOC113544495 LOC108277689 coding upstream 370 4317991 ~ 4336898 (-)
LOC113544498 clcn2,LOC108411335,LOC103359445 coding upstream 75155 4392776 ~ 4460707 (-)
chrd chrd coding upstream 162926 4480547 ~ 4491680 (-)
LOC113544596 LOC108278291,LOC108413393 coding upstream 184160 4501781 ~ 4525814 (-)
LOC113544562 pde2a coding upstream 368100 4685721 ~ 4858407 (-)
G220290 eif4g1 non-coding downstream 9420 4304359 ~ 4305446 (-)
LOC113544520 NA non-coding downstream 489125 3821225 ~ 3825741 (-)
G219836 NA non-coding downstream 726350 3588212 ~ 3588516 (-)
LOC117599091 NA non-coding downstream 794379 3348363 ~ 3520487 (-)
G219697 NA non-coding downstream 1283865 3015916 ~ 3031001 (-)
G220267 NA non-coding upstream 71651 4389272 ~ 4392236 (-)
G220359 NA non-coding upstream 246099 4563720 ~ 4564128 (-)
G220362 NA non-coding upstream 271723 4589344 ~ 4589553 (-)
G220621 NA non-coding upstream 298661 4616282 ~ 4616632 (-)
G220690 NA non-coding upstream 558023 4875644 ~ 4883440 (-)
LOC113544484 NA other downstream 498031 3740282 ~ 3816835 (-)
igsf11 igsf11 other downstream 507752 3727377 ~ 3807114 (-)
G219642 NA other downstream 1351516 2887907 ~ 2963350 (-)
G219651 NA other downstream 1403701 2907326 ~ 2911165 (-)
gal3st2 LOC108261785,LOC108277996 other downstream 1684965 2612857 ~ 2629901 (-)
LOC113544632 arap1 other upstream 580329 4897950 ~ 4971519 (-)
nectin3a LOC108278241 other upstream 1232798 5550419 ~ 5599375 (-)
G220990 NA other upstream 1392477 5710098 ~ 5710891 (-)
LOC113532612 LOC108277970 other upstream 1480307 5797928 ~ 5803973 (-)
dynll2a dynll2a,LOC107554284 other upstream 1703524 6021145 ~ 6024353 (-)

Expression


Co-expression Network