G220290 (eif4g1)


Basic Information

Item Value
gene id G220290
gene name eif4g1
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 4304359 ~ 4305446 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU260867
GCAGCGTCTAGCTCCTTTTGTTTCTTCTCGAACGTCTCGTCATCGTCCTTGTCCTTCTCAAACTCTTTCTGGCAGCGATTCAGCAGAAGCTTTCGGAAATTCACCGTCACTCCCGGCTTATCAGAGGTAGGCACTTTCAACtgcacagagagatagacagagagagagagagagagagagagagagaaaattctCAAATGAATGCACGCAGTGGCATTTAATCTCAGATTCAGAATATGAAGCCGTGTCTGAtgcataaagacacacacacagacacgcacacagacacgcgcacgcacgcacgcacacagacacacgcacacacaagcacacccACCCCCATGAGGCAGCGGCACATGTTAGCGTAAGCGACAGAGAAGTTGGGCTCTGAGATGGCCTTCTCGAACACCAGGTCGATCACGCCCTTCAGCCTCTCCTCTGTGTCGATGGTCATCTCTGTGATCTGCTTCATCAGCGGCTGGAACATCTGGGGGGTCAGTTTGTTCAGCACGCCTCGCACACGCCGCAACAGCTCCTGCGTCTTCACTGATTCCGGGTCATCGACGTCGCCTCCGCCCCCACGCCGCCACGCCTTCTCGGCCTTGCTCAGCTGAATATCGTCATTCAGGGACACGCCGGACAGCACGATCTTCCTCGGTTCCTTACGGGATCCGGACTGACCCGAGCGCCTCGGGCCGGGCAAACCCACagccATGGGCCATTCGTCAATTCTGCACAAGTGTCATGCTACATGTTGTTGTGAAGCTGTGATTGGTAGACAGACTGACCGGGCCACGCCCCCCGACTGGCTGTCTGCCCAGGTTAGCAAATGAGGGGGTGAAATCTGGACCACAGTTCATTCTGCTCAGGTCTAACGGCCGCAGAGGAGTTTTAT

Function

symbol description
eif4g1 Enables several functions, including ATP binding activity; RNA binding activity; and eukaryotic initiation factor 4E binding activity. Involved in several processes, including energy homeostasis; positive regulation of eukaryotic translation initiation factor 4F complex assembly; and regulation of cellular protein metabolic process. Located in cytosol and nucleus. Part of eukaryotic translation initiation factor 4F complex and polysome. Implicated in late onset Parkinson's disease.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU260867 True 895 lncRNA 0.55 3 4304359 4305446

Neighbor

gene id symbol gene type direction distance location
LOC117599095 NA coding downstream 35312 4259163 ~ 4269047 (-)
lrfn1 lrfn1,LOC108277437,LOC108440319,LOC107733400 coding downstream 231491 3920788 ~ 4072868 (-)
lsamp lsamp,LOC106612642,LOC106580806 coding downstream 613864 3033027 ~ 3690495 (-)
LOC113544469 NA coding downstream 1350375 2946753 ~ 2953984 (-)
sidt2 sidt2 coding downstream 1423066 2863388 ~ 2881293 (-)
LOC113544495 LOC108277689 coding upstream 12545 4317991 ~ 4336898 (-)
LOC113544498 clcn2,LOC108411335,LOC103359445 coding upstream 87330 4392776 ~ 4460707 (-)
chrd chrd coding upstream 175101 4480547 ~ 4491680 (-)
LOC113544596 LOC108278291,LOC108413393 coding upstream 196335 4501781 ~ 4525814 (-)
LOC113544562 pde2a coding upstream 380275 4685721 ~ 4858407 (-)
LOC113544520 NA non-coding downstream 478618 3821225 ~ 3825741 (-)
G219836 NA non-coding downstream 715843 3588212 ~ 3588516 (-)
LOC117599091 NA non-coding downstream 783872 3348363 ~ 3520487 (-)
G219697 NA non-coding downstream 1273358 3015916 ~ 3031001 (-)
G219678 NA non-coding downstream 1312700 2970093 ~ 2991659 (-)
G220266 NA non-coding upstream 9420 4314866 ~ 4317621 (-)
G220267 NA non-coding upstream 83826 4389272 ~ 4392236 (-)
G220359 NA non-coding upstream 258274 4563720 ~ 4564128 (-)
G220362 NA non-coding upstream 283898 4589344 ~ 4589553 (-)
G220621 NA non-coding upstream 310836 4616282 ~ 4616632 (-)
LOC113544484 NA other downstream 487524 3740282 ~ 3816835 (-)
igsf11 igsf11 other downstream 497245 3727377 ~ 3807114 (-)
G219642 NA other downstream 1341009 2887907 ~ 2963350 (-)
G219651 NA other downstream 1393194 2907326 ~ 2911165 (-)
gal3st2 LOC108261785,LOC108277996 other downstream 1674458 2612857 ~ 2629901 (-)
LOC113544632 arap1 other upstream 592504 4897950 ~ 4971519 (-)
nectin3a LOC108278241 other upstream 1244973 5550419 ~ 5599375 (-)
G220990 NA other upstream 1404652 5710098 ~ 5710891 (-)
LOC113532612 LOC108277970 other upstream 1492482 5797928 ~ 5803973 (-)
dynll2a dynll2a,LOC107554284 other upstream 1715699 6021145 ~ 6024353 (-)

Expression


Co-expression Network