Gene
RNA
| Item | Value |
|---|---|
| gene id | G220362 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047608.1 |
| NCBI id | CM018554.1 |
| chromosome length | 25848897 |
| location | 4589344 ~ 4589553 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU260949 | True | 210 | lncRNA | 0.40 | 1 | 4589344 | 4589553 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC113544596 | LOC108278291,LOC108413393 | coding | downstream | 63530 | 4501781 ~ 4525814 (-) |
| chrd | chrd | coding | downstream | 97664 | 4480547 ~ 4491680 (-) |
| LOC113544498 | clcn2,LOC108411335,LOC103359445 | coding | downstream | 128637 | 4392776 ~ 4460707 (-) |
| LOC113544495 | LOC108277689 | coding | downstream | 252446 | 4317991 ~ 4336898 (-) |
| LOC117599095 | NA | coding | downstream | 320297 | 4259163 ~ 4269047 (-) |
| LOC113544562 | pde2a | coding | upstream | 96168 | 4685721 ~ 4858407 (-) |
| stard10 | stard10,LOC108278271,LOC106581404 | coding | upstream | 389380 | 4978933 ~ 4988249 (-) |
| inppl1a | inppl1,LOC108261207 | coding | upstream | 465363 | 5054916 ~ 5091599 (-) |
| folr | LOC108277654 | coding | upstream | 505290 | 5094843 ~ 5098990 (-) |
| tomt | LOC108277653,LOC107679441,LOC108411353,LOC107557662 | coding | upstream | 521115 | 5110668 ~ 5113955 (-) |
| G220359 | NA | non-coding | downstream | 25216 | 4563720 ~ 4564128 (-) |
| G220267 | NA | non-coding | downstream | 197108 | 4389272 ~ 4392236 (-) |
| G220278 | NA | non-coding | downstream | 264199 | 4281004 ~ 4325145 (-) |
| G220266 | NA | non-coding | downstream | 271723 | 4314866 ~ 4317621 (-) |
| G220290 | eif4g1 | non-coding | downstream | 283898 | 4304359 ~ 4305446 (-) |
| G220621 | NA | non-coding | upstream | 26729 | 4616282 ~ 4616632 (-) |
| G220690 | NA | non-coding | upstream | 286091 | 4875644 ~ 4883440 (-) |
| G220693 | NA | non-coding | upstream | 298353 | 4887906 ~ 4888446 (-) |
| G220694 | NA | non-coding | upstream | 299311 | 4888864 ~ 4889213 (-) |
| LOC117599069 | NA | non-coding | upstream | 313070 | 4902623 ~ 4905297 (-) |
| LOC113544484 | NA | other | downstream | 772509 | 3740282 ~ 3816835 (-) |
| igsf11 | igsf11 | other | downstream | 782230 | 3727377 ~ 3807114 (-) |
| G219642 | NA | other | downstream | 1625994 | 2887907 ~ 2963350 (-) |
| G219651 | NA | other | downstream | 1678179 | 2907326 ~ 2911165 (-) |
| gal3st2 | LOC108261785,LOC108277996 | other | downstream | 1959443 | 2612857 ~ 2629901 (-) |
| LOC113544632 | arap1 | other | upstream | 308397 | 4897950 ~ 4971519 (-) |
| nectin3a | LOC108278241 | other | upstream | 960866 | 5550419 ~ 5599375 (-) |
| G220990 | NA | other | upstream | 1120545 | 5710098 ~ 5710891 (-) |
| LOC113532612 | LOC108277970 | other | upstream | 1208375 | 5797928 ~ 5803973 (-) |
| dynll2a | dynll2a,LOC107554284 | other | upstream | 1431592 | 6021145 ~ 6024353 (-) |
