G220693


Basic Information

Item Value
gene id G220693
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 4887906 ~ 4888446 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU261318
cggaaacaagagtcaatgtttgtgacagaactgtaagaaaccggcagaatgaaatgagatttacatctaaaaaagctaaaagaaaaccagcactaacaccaaaacagaagaaaacaaggttacagtgggctaaggagaagcagtcatggagtgtggatgattggatgaaagtgaaattcagtgatgaatcatgaatctgcattggccaaggagatgatgctggaacttttgtctggtgccgttctaacaaaacatataaagatgactgcctgaaccaatcaaatttcccaactcatttatgatattgggttgcatgtcaggtaaaggaccaggggagatggcagtcattacctcagcagtcaatgcacagttgtacagtgaaattttggacattttctcattccatccatagaaaataggtttggtgatgatgaaataatttttcaggatgacaatgcatcttgccacagagcaaacagttttaaagctttttttcaggaaaggcatatcaactcaatgacatggccagcaaacagtccag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU261318 True 541 lncRNA 0.39 1 4887906 4888446

Neighbor

gene id symbol gene type direction distance location
LOC113544562 pde2a coding downstream 29499 4685721 ~ 4858407 (-)
LOC113544596 LOC108278291,LOC108413393 coding downstream 362092 4501781 ~ 4525814 (-)
chrd chrd coding downstream 396226 4480547 ~ 4491680 (-)
LOC113544498 clcn2,LOC108411335,LOC103359445 coding downstream 427199 4392776 ~ 4460707 (-)
LOC113544495 LOC108277689 coding downstream 551008 4317991 ~ 4336898 (-)
stard10 stard10,LOC108278271,LOC106581404 coding upstream 90487 4978933 ~ 4988249 (-)
inppl1a inppl1,LOC108261207 coding upstream 166470 5054916 ~ 5091599 (-)
folr LOC108277654 coding upstream 206397 5094843 ~ 5098990 (-)
tomt LOC108277653,LOC107679441,LOC108411353,LOC107557662 coding upstream 222222 5110668 ~ 5113955 (-)
kbtbd3 kbtbd3 coding upstream 248857 5137303 ~ 5142967 (-)
G220690 NA non-coding downstream 4466 4875644 ~ 4883440 (-)
G220621 NA non-coding downstream 271274 4616282 ~ 4616632 (-)
G220362 NA non-coding downstream 298353 4589344 ~ 4589553 (-)
G220359 NA non-coding downstream 323778 4563720 ~ 4564128 (-)
G220267 NA non-coding downstream 495670 4389272 ~ 4392236 (-)
G220694 NA non-coding upstream 418 4888864 ~ 4889213 (-)
LOC117599069 NA non-coding upstream 14177 4902623 ~ 4905297 (-)
G220705 NA non-coding upstream 60098 4948544 ~ 4995694 (-)
LOC117599070 NA non-coding upstream 124702 5013148 ~ 5014943 (-)
G220816 NA non-coding upstream 453623 5342069 ~ 5342566 (-)
LOC113544484 NA other downstream 1071071 3740282 ~ 3816835 (-)
igsf11 igsf11 other downstream 1080792 3727377 ~ 3807114 (-)
G219642 NA other downstream 1924556 2887907 ~ 2963350 (-)
G219651 NA other downstream 1976741 2907326 ~ 2911165 (-)
gal3st2 LOC108261785,LOC108277996 other downstream 2258005 2612857 ~ 2629901 (-)
LOC113544632 arap1 other upstream 9504 4897950 ~ 4971519 (-)
nectin3a LOC108278241 other upstream 661973 5550419 ~ 5599375 (-)
G220990 NA other upstream 821652 5710098 ~ 5710891 (-)
LOC113532612 LOC108277970 other upstream 909482 5797928 ~ 5803973 (-)
dynll2a dynll2a,LOC107554284 other upstream 1132699 6021145 ~ 6024353 (-)

Expression


Co-expression Network