nectin3a (LOC108278241)


Basic Information

Item Value
gene id nectin3a
gene name LOC108278241
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 5550419 ~ 5599375 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU261600
AGGGCTTGTTGGTATAACAAGGGTGAGGATGTTGTTTCCACGTGTTCAGAGGTCAGATTGCTCCGCCTACTTGAGCCGAAATAATCACGCCCATTCTGAGATCTCCAGTCCTACGGTTACCTCAGGCAGTGTGGTCGTACGACAAGCTTACCGGACTCAGAAATCATGGCAAGGGGACTATCGGTTTATCGCGGGGATATTGCGGGGATATCTTTGGAACTGTCCAttcatcttcctcttcttttattcatcttcatcgtgttgccacatgattggctgactggataattgcatgaatgagcaggtgtccTACTAATCTGATTGAGTGTGAAGAGAAATGTATTCTGCCTGACACGCgcctttctgtgtgtttttcttcttgcaattaCCGAGTGGGTAGGGAAGTATGAAGAGTGAGAGAGCCTCAGTAGACATATATTTCAGACATAATAGCTAAGGCTTACCACATGTACCTATGCGCCAAGGGTTTCAGAGCATCAGCCACTTGCCTATGAGTTTAATTATATTCTACATGTGtaactgattttcttttttatgaatatgatatttattgatgtataattgaataaatgtcctttttttgaatgaaaagaaaatgcctTCTAAATTCTGCAAACTGCGGGTCTTAAAGACTCACTCaaaggagatatatatatatattttgtactgAACAATTTTGGGCCCAAAGTATATTTTACACAACTCTTAAAATCATAACctataattttttcctctatatTTCAGCTTTTAATGTTTAGCACAGATGGTCTTACCTATTTTTTGAAGTTAGAA
>XM_026924796.2
TACTTGAGCCGAAATAATCACGCCCATTCTGAGATCTCCAGTCCTACGGTTACCTCAGGCAGTGTGGTCGTACGACAAGCTTACCGGACTCAGAAATCATGGCAAGGGGACTATCGGTTTATCGCGGGGATATTGCGGGGATATCTTTGGAACTGTCCAttcatcttcctcttcttttattcatcttcatcgGTGTTTGCAGCAACAAGGTTGTGGTTCCAGAGCATATTCAAGTTGTGCTTGGTAAGAATGCCACGCTGAGCTGCAGGGTGCACGTGGGTGCCAACCTCAGCTTGACACAAAGCTCCTGGGAACGCAACTTGCCCATGGGCTCTCTCACAGTGGCAGTATTCAATCCACAGTTCGGCATCTCCATATCTGAGAAGTACATAAATCGCGTCCATTTTCTCAACCCATCAGTAGAGGATGCCTCTATTGTGTTGGAGGGAGTAGGCTTTGCAGATATTGGCTCCTATATTTGCAAGGTGGTCACCTTCCCACTGGGTAACTCACAGGCCTCTACAGTCATTGACATCATGGttgAACCCAAAGTATATGTGTTGGCGGGTCCTGATCCTCTGGTGGATGGTAATGTGGAGGGTGTGGTGGCAACATGCATGGCTGAAAGGGCCCGTCCCCCGGCTGATGTCTTCTGGGAGGCGGAGCTTTACGGACGCTCAGAGCAGATCATTCAGGATGAACCTGATGGCACCACCTCCACGCAGGTGGACTACATCTGGGCACCCAGTAGCCATGCCCTTAACCACACCCTCACCTGTGTGGTACGCCACCCTGCCCTGGCTATGGACTTGCGCATCCCCTATGTGCTGAACATACAATTTGCTCCAGATGTCATGGTTGAAGTCCAGAATGATGTTTGGTATGTGGGACAAGAAAATGCAAAGTTGGACTGCAGAGCAAATGCcaatcctcctcctcatcacttCTTCTGGACCAGGATCAACATGCAGATGCCTGCAGGAGTTAAGATGACAAACAGCAGTCTGGTCTTCACTCGTCCTCTGCAGAGAAATGATTCTGGAACGTATAGATGTGAGGTCCAGAACAAGGTTGGACTACATTCTCAGGAGGTACACATCTGGATACATGAGCCTCCGTCTATGCCTTCTGTCCCTGCCACTACCACTGGAGTCATTCCTGGCCTTTATAGCTCAACACCCACCCACTTCCGTGCCCACTTCACCTCCCCAACGCTGGCATCACTGCATGATGATACGATGGGCAGTGTGTTGGGCAGTGCCATAGGAGGCACACTTGTACTGGTTCTTCTGCTGGGTATTGCTTTGCTGTGGTACACCCGTCAGCAGCGTACATTCCGTGGTGATTACTACACCAAGCAGTACATTGGGCCCTCATATATGCAGAAAGAGTCCATTGAGCTTCATGACACCTTTAGAGATGACTTGGCTAATAGCAGCCAAGACCTGAAACACAAACTTAATGGTGATATACCTGATACACAGATATACCACAGttacagaaaaaacaaaggCTGCTGGGTGAGTTATTGCCCTGAAAACTCTAACATTAACACAACTGGGAACACCAGCACCCCCTACCTGCAAGAGAAGAGGTACAATATGGCCACAGACTGTGACTATGTGTCTCACAAGGACGGATCTGTTATCTCTCGTAGAGAATggtatgtgtaaatatgtgagATGGTTAATGGGAGACAAGATTTTACAGAATACAGTATTCGcaaactcttaaaataaaggaaagatttttaaaatgtatatcagGCATATTAAAGGCTGTATTATTTTCTAGCTATTACCTCTAGGTGGTTGATATTGCACAGCAAAtgtctgtgttgttttgtgctTTTAATCCCAAGAGAGATCAAAGGGTAGCCTGAAGCAATGAAAACAAGTTGGAATACTGTATATTGCCTCCTCTTTCCTGTGCCCTTGTTTAAAATTTCTGATTCAGTTTTAGTTACTTAGAGATTCTTATGTTTTGCGTAACAAATACAATGAAAAGTAATTACATTGTATTGTTTGTATGTTCTAACAGTCTGAATAATTTTTCCATTGTTCATATTATTGCAAAAAATTGCATCGTTTGTAGTTTCCCTGGACTGTAAAGATAATGAAAAACATCACAGATTTAAAGTGAAAATCTACATATCGCACTCTTGTTTAAGTACACATATACTTTCTCTGTTTTAACTTCTTGTGTTTTCAATTTTTAAGAATTAGTGGGTATAATATGGAAAAACTTAATGAATGAGTTCCTCAGCACTTGATGTGTGTTTTAAGTTTAGATGATGAAATGGAAGGTTGCATAAACTCTAGTAATGCTAAACAATTGGGTCTAAAGATAGCGTGGTTCCTCAAACTGTCCAGTTCAGGAGGCGATAATGTAGTGCCTCCTGAGCCTTAGTACCAATCAGCTGCACAGGTACTGGTGGCAGGTGGCACAGAGTGTTTTTTGCCAAGCTCTGGCCAACTTGCCTTCTCATCTGCATGAACAATACTGGTGATCTACCGCATACTGCCTGTAAGAATTCTGTACCTATTGTACTTGCAGTTTCGGGCATTTAGTGGCCAGTAGAATCTGTGCCACCATGTTTGAGATACAATGCACATTTTTCATAGCCTCATACAGTTTGTAAATCACCATGTCAGCTCCTTTATATTCAGCTGCATGCAGCACTGATTAACGTGCAGGGCTTCATCAGCCTGAACCATTACTGAGTCCACTGGTGTCTCTACCGTACATGTTATCAACCTTCTCAGTACTTCTATATCTGTCACTGCAGCCAGTATATATGCTTTTTTCTCTGGCTGCAGCTTCAGTGTGCTTACTTACTTCAGATATATGGTGGGATATCCCAGTCATTCACTTTGCTGAATATTCCATGAAATGGGTTAGGCATTCAATCAGCTGTGTTAAATGGATGATCCATGTTCATTAATATCAGACTACAGCACATTCGCTGCTGCTGAGCTGAACTTCTCCATTATGTTCTGATCATAAGAATGCTTCAGTGGGGGGCTATCAGCACTCTCCTCCAGGGTGGCATCATTAGAGAAGCTGCAGCTAAATTgcagccttaggactgcaaattgctaagaacagttgaCACTGAAGTTGCCATCATAACATTGAATTATTTGAAcagactttaagttaaaacaataatgaattcagaaatgactctgatgctcataagctcataagttcctgttaacac
>XM_034310892.1
CGACAAGCTTACCGGACTCAGAAATCATGGCAAGGGGACTATCGGTTTATCGCGGGGATATTGCGGGGATATCTTTGGAACTGTCCAttcatcttcctcttcttttattcatcttcatcgtgttgccacatgattggctgactggataattgcatgaatgagcaggtgtccTACTAATCTGATTGGTGTTTGCAGCAACAAGGTTGTGGTTCCAGAGCATATTCAAGTTGTGCTTGGTAAGAATGCCACGCTGAGCTGCAGGGTGCACGTGGGTGCCAACCTCAGCTTGACACAAAGCTCCTGGGAACGCAACTTGCCCATGGGCTCTCTCACAGTGGCAGTATTCAATCCACAGTTCGGCATCTCCATATCTGAGAAGTACATAAATCGCGTCCATTTTCTCAACCCATCAGTAGAGGATGCCTCTATTGTGTTGGAGGGAGTAGGCTTTGCAGATATTGGCTCCTATATTTGCAAGGTGGTCACCTTCCCACTGGGTAACTCACAGGCCTCTACAGTCATTGACATCATGGttgAACCCAAAGTATATGTGTTGGCGGGTCCTGATCCTCTGGTGGATGGTAATGTGGAGGGTGTGGTGGCAACATGCATGGCTGAAAGGGCCCGTCCCCCGGCTGATGTCTTCTGGGAGGCGGAGCTTTACGGACGCTCAGAGCAGATCATTCAGGATGAACCTGATGGCACCACCTCCACGCAGGTGGACTACATCTGGGCACCCAGTAGCCATGCCCTTAACCACACCCTCACCTGTGTGGTACGCCACCCTGCCCTGGCTATGGACTTGCGCATCCCCTATGTGCTGAACATACAATTTGCTCCAGATGTCATGGTTGAAGTCCAGAATGATGTTTGGTATGTGGGACAAGAAAATGCAAAGTTGGACTGCAGAGCAAATGCcaatcctcctcctcatcacttCTTCTGGACCAGGATCAACATGCAGATGCCTGCAGGAGTTAAGATGACAAACAGCAGTCTGGTCTTCACTCGTCCTCTGCAGAGAAATGATTCTGGAACGTATAGATGTGAGGTCCAGAACAAGGTTGGACTACATTCTCAGGAGGTACACATCTGGATACATGAGCCTCCGTCTATGCCTTCTGTCCCTGCCACTACCACTGGAGTCATTCCTGGCCTTTATAGCTCAACACCCACCCACTTCCGTGCCCACTTCACCTCCCCAACGCTGGCATCACTGCATGATGATACGATGGGCAGTGTGTTGGGCAGTGCCATAGGAGGCACACTTGTACTGGTTCTTCTGCTGGGTATTGCTTTGCTGTGGTACACCCGTCAGCAGCGTACATTCCGTGGTGATTACTACACCAAGCAGTACATTGGGCCCTCATATATGCAGAAAGAGTCCATTGAGCTTCATGACACCTTTAGAGATGACTTGGCTAATAGCAGCCAAGACCTGAAACACAAACTTAATGGTGATATACCTGATACACAGATATACCACAGttacagaaaaaacaaaggCTGCTGGGTGAGTTATTGCCCTGAAAACTCTAACATTAACACAACTGGGAACACCAGCACCCCCTACCTGCAAGAGAAGAGGTACAATATGGCCACAGACTGTGACTATGTGTCTCACAAGGACGGATCTGTTATCTCTCGTAGAGAATggtatgtgtaaatatgtgagATGGTTAATGGGAGACAAGATTTTACAGAATACAGTATTCGcaaactcttaaaataaaggaaagatttttaaaatgtatatcagGCATATTAAAGGCTGTATTATTTTCTAGCTATTACCTCTAGGTGGTTGATATTGCACAGCAAAtgtctgtgttgttttgtgctTTTAATCCCAAGAGAGATCAAAGGGTAGCCTGAAGCAATGAAAACAAGTTGGAATACTGTATATTGCCTCCTCTTTCCTGTGCCCTTGTTTAAAATTTCTGATTCAGTTTTAGTTACTTAGAGATTCTTATGTTTTGCGTAACAAATACAATGAAAAGTAATTACATTGTATTGTTTGTATGTTCTAACAGTCTGAATAATTTTTCCATTGTTCATATTATTGCAAAAAATTGCATCGTTTGTAGTTTCCCTGGACTGTAAAGATAATGAAAAACATCACAGATTTAAAGTGAAAATCTACATATCGCACTCTTGTTTAAGTACACATATACTTTCTCTGTTTTAACTTCTTGTGTTTTCAATTTTTAAGAATTAGTGGGTATAATATGGAAAAACTTAATGAATGAGTTCCTCAGCACTTGATGTGTGTTTTAAGTTTAGATGATGAAATGGAAGGTTGCATAAACTCTAGTAATGCTAAACAATTGGGTCTAAAGATAGCGTGGTTCCTCAAACTGTCCAGTTCAGGAGGCGATAATGTAGTGCCTCCTGAGCCTTAGTACCAATCAGCTGCACAGGTACTGGTGGCAGGTGGCACAGAGTGTTTTTTGCCAAGCTCTGGCCAACTTGCCTTCTCATCTGCATGAACAATACTGGTGATCTACCGCATACTGCCTGTAAGAATTCTGTACCTATTGTACTTGCAGTTTCGGGCATTTAGTGGCCAGTAGAATCTGTGCCACCATGTTTGAGATACAATGCACATTTTTCATAGCCTCATACAGTTTGTAAATCACCATGTCAGCTCCTTTATATTCAGCTGCATGCAGCACTGATTAACGTGCAGGGCTTCATCAGCCTGAACCATTACTGAGTCCACTGGTGTCTCTACCGTACATGTTATCAACCTTCTCAGTACTTCTATATCTGTCACTGCAGCCAGTATATATGCTTTTTTCTCTGGCTGCAGCTTCAGTGTGCTTACTTACTTCAGATATATGGTGGGATATCCCAGTCATTCACTTTGCTGAATATTCCATGAAATGGGTTAGGCATTCAATCAGCTGTGTTAAATGGATGATCCATGTTCATTAATATCAGACTACAGCACATTCGCTGCTGCTGAGCTGAACTTCTCCATTATGTTCTGATCATAAGAATGCTTCAGTGGGGGGCTATCAGCACTCTCCTCCAGGGTGGCATCATTAGAGAAGCTGCAGCTAAATTgcagccttaggactgcaaattgctaagaacagttgaCACTGAAGTTGCCATCATAACATTGAATTATTTGAAcagactttaagttaaaacaataatgaattcagaaatgactctgatgctcataagctcataagttcctgttaacac
>XM_034310893.1
TACTTGAGCCGAAATAATCACGCCCATTCTGAGATCTCCAGTCCTACGGTTACCTCAGGCAGTGTGGTCGTACGACAAGCTTACCGGACTCAGAAATCATGGCAAGGGGACTATCGGTTTATCGCGGGGATATTGCGGGGATATCTTTGGAACTGTCCAttcatcttcctcttcttttattcatcttcatcgGTGTTTGCAGCAACAAGGTTGTGGTTCCAGAGCATATTCAAGTTGTGCTTGGTAAGAATGCCACGCTGAGCTGCAGGGTGCACGTGGGTGCCAACCTCAGCTTGACACAAAGCTCCTGGGAACGCAACTTGCCCATGGGCTCTCTCACAGTGGCAGTATTCAATCCACAGTTCGGCATCTCCATATCTGAGAAGTACATAAATCGCGTCCATTTTCTCAACCCATCAGTAGAGGATGCCTCTATTGTGTTGGAGGGAGTAGGCTTTGCAGATATTGGCTCCTATATTTGCAAGGTGGTCACCTTCCCACTGGGTAACTCACAGGCCTCTACAGTCATTGACATCATGGttgAACCCAAAGTATATGTGTTGGCGGGTCCTGATCCTCTGGTGGATGGTAATGTGGAGGGTGTGGTGGCAACATGCATGGCTGAAAGGGCCCGTCCCCCGGCTGATGTCTTCTGGGAGGCGGAGCTTTACGGACGCTCAGAGCAGATCATTCAGGATGAACCTGATGGCACCACCTCCACGCAGGTGGACTACATCTGGGCACCCAGTAGCCATGCCCTTAACCACACCCTCACCTGTGTGGTACGCCACCCTGCCCTGGCTATGGACTTGCGCATCCCCTATGTGCTGAACATACAATTTGCTCCAGATGTCATGGTTGAAGTCCAGAATGATGTTTGGTATGTGGGACAAGAAAATGCAAAGTTGGACTGCAGAGCAAATGCcaatcctcctcctcatcacttCTTCTGGACCAGGATCAACATGCAGATGCCTGCAGGAGTTAAGATGACAAACAGCAGTCTGGTCTTCACTCGTCCTCTGCAGAGAAATGATTCTGGAACGTATAGATGTGAGGTCCAGAACAAGGTTGGACTACATTCTCAGGAGGTACACATCTGGATACATGTTCCTGCCGACTGGTGGACCTACCGTCATTCAGCATAACCACTAGGCCTATCAATGACAGGAGCATGCCGAAATGGGAGGAGCTCTGGCTTTAAAAGGCTCATGGCGACAACAGCAAGACAGCCTTCGGCTCACACTCATATACACGCTGCTCGTTGTTTTAGTGCTTTGCTTGGGTTTGTTTCATGTTTGACACTGCTTGTTTCATTAAGCTTTATGCTAAGCTTCTGTACTTTAATGTGTGCTATTTGTGCTAACAGTCTTTGATGTCTGCTTATGTGTTAGTTGGTGTGTCCTCGCTGATATCTCACTGTCTCTATTGTTTCCCCCTCCACCATGCAGTTTTTGGTATAACAGTAGGGAAGACGAACAGGTAAGCAGGTGCGCGCAAATACGTTAGCCTCACGTAGTGTTTCCATTGTCTAGTTACTCTAGGTAAGTAGACAGGTAACACCCCTTGTATTTTACTAAAGGTTAAGGTAGTGTAGCAGATAGTTTTTTCTGGGTAGTTAGTTAAGAGGTTAAATTTAAGAAAAGGGTTAGAAACCTTTTATTCTGTTCTTTCCTTTGGTACcgtctcgttctctctctctagggAGCCATCTGTGAAACCATTTGTCATTCCACACACGTCATTTGTTTTCAAAGAGCTGTTTTGTAAAGTGTCTCTTGTATATAGTCAGGTATTCTGGTTTCTTATGTATATAGTTTTGCTCTTTGTAATAAACTTTGTAAATATTAAGCACAATTCCACAGTCTCCTCCTTCCTCCACCAACC

Function

NR:

description
PREDICTED: poliovirus receptor-related protein 3

GO: NA

KEGG:

id description
K06592 PVRL3, CD113; poliovirus receptor-related protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
TU261600 False 813 lncRNA 0.39 3 5588282 5599375
XM_026924796.2 True 3223 mRNA 0.44 6 5568218 5599308
XM_034310892.1 False 3216 mRNA 0.44 7 5568218 5599236
XM_034310893.1 False 1887 mRNA 0.47 6 5550419 5599308

Neighbor

gene id symbol gene type direction distance location
si:ch211-149e23.4 LOC108278242 coding downstream 1372 5536198 ~ 5549047 (-)
LOC113532491 dnhd1 coding downstream 62175 5451275 ~ 5488244 (-)
LOC113532789 flj13639,LOC108278219,LOC108433977,LOC103025652,LOC107725108,LOC107670134,LOC107669913 coding downstream 147101 5393818 ~ 5403318 (-)
kbtbd3 kbtbd3 coding downstream 407452 5137303 ~ 5142967 (-)
tomt LOC108277653,LOC107679441,LOC108411353,LOC107557662 coding downstream 436464 5110668 ~ 5113955 (-)
diabloa LOC108278350 coding upstream 7329 5606704 ~ 5609015 (-)
LOC113532847 LOC108277604 coding upstream 22131 5621506 ~ 5622471 (-)
ywhag2 ywhag2,LOC108277419,LOC107582613,LOC100700540,LOC107694031,LOC103021402,LOC101160255,LOC107592751,LOC108437655 coding upstream 133360 5732735 ~ 5743421 (-)
proca1 proca1,LOC108278205,LOC108443503,LOC107582608,LOC107672398,LOC107752378,LOC107694032,LOC106581195 coding upstream 169252 5768627 ~ 5772520 (-)
rab34a rab34a,LOC108278203,LOC107672399,LOC107758713,LOC107657101,LOC108443499 coding upstream 187638 5787013 ~ 5796975 (-)
G220884 NA non-coding downstream 46477 5503040 ~ 5503942 (-)
G220864 NA non-coding downstream 61411 5488775 ~ 5489008 (-)
G220858 NA non-coding downstream 95496 5454596 ~ 5454923 (-)
G220834 NA non-coding downstream 106717 5443492 ~ 5443702 (-)
G220826 NA non-coding downstream 133424 5416785 ~ 5416995 (-)
G221026 NA non-coding upstream 195753 5795128 ~ 5795453 (-)
G221068 NA non-coding upstream 271026 5870401 ~ 5870627 (-)
G221214 NA non-coding upstream 492538 6091913 ~ 6092434 (-)
G221245 NA non-coding upstream 603689 6203064 ~ 6204930 (-)
G221450 NA non-coding upstream 726716 6326091 ~ 6416808 (-)
LOC113544632 arap1 other downstream 578900 4897950 ~ 4971519 (-)
LOC113544484 NA other downstream 1733584 3740282 ~ 3816835 (-)
igsf11 igsf11 other downstream 1743305 3727377 ~ 3807114 (-)
G219642 NA other downstream 2587069 2887907 ~ 2963350 (-)
G219651 NA other downstream 2639254 2907326 ~ 2911165 (-)
G220990 NA other upstream 110723 5710098 ~ 5710891 (-)
LOC113532612 LOC108277970 other upstream 198553 5797928 ~ 5803973 (-)
dynll2a dynll2a,LOC107554284 other upstream 421770 6021145 ~ 6024353 (-)
LOC113532805 NA other upstream 1019797 6619172 ~ 6653418 (-)
zgc:77784 LOC108277423 other upstream 1793040 7392415 ~ 7463499 (-)

Expression


Co-expression Network