G220990


Basic Information

Item Value
gene id G220990
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 5710098 ~ 5710891 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU261666
TTTCACTTCACTTTCATCTTTTTCACATTCACTGTTTGCCTTTGTGATAGATCCAGAGCTAGAAGATAATGGTGAGTCATCTTCTGTATCTGTTGTGCTGTCATGCTGACCATGGTCTGTCATCTGCCTGGTGTCTTGTGTGGAATCCTTGTTAGAAAACACCTCTTCATCTCCATGTTCCACACAAATATTATGCACATCTCCTTCTGCATCTCCTTCTGCATCTCCTTCTGCATCTCCTGCATTCTCACATAATTCAGTCCCAGCAGAAAGATCTGAATCAGTAGCAGTTCTCTTTGGTTTAGAGGTAGTAACTGGTGGAGACATTGCAGTTTTTCTCCCCTTTTGGTGTATGAGGTCTACAGGCTGCTCTGTTGCCTCAAGACTCTCTAAAGAGCCAAGTTCAGGATCAGACAGTACAGTAGTCCAGGGGCTTGTCCTGTCCGTGGCTGAAGTGACCTCATTGAGCGGCCGAGGTTCTATCAATATCTCTTCAAACTCACCATTATCATTTTCATCCACCTCATCCTCAGTGGAGAGACCGTCCTGGTGGAGTTCCTCATTCCTAGAATCAAATTCTTCTGAAGTAAGAGACATGAGGGGTGAGATGTCCTCTATCTTTGCTTCTGGGACTTTTTCATTAAAGTTCTCTGTGTCACAGTTCTCTGACTCTGTTAGTGTTGAACGTTCCACACGttccacaaaaacacacacttcagattCAGCTGGTGTGGAAGGATTCCTAAGCGTGTTTGAGGAAGATTCTTTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU261666 True 770 TUCP 0.44 2 5710098 5710891

Neighbor

gene id symbol gene type direction distance location
LOC113532847 LOC108277604 coding downstream 87627 5621506 ~ 5622471 (-)
diabloa LOC108278350 coding downstream 101083 5606704 ~ 5609015 (-)
si:ch211-149e23.4 LOC108278242 coding downstream 161051 5536198 ~ 5549047 (-)
LOC113532491 dnhd1 coding downstream 221854 5451275 ~ 5488244 (-)
LOC113532789 flj13639,LOC108278219,LOC108433977,LOC103025652,LOC107725108,LOC107670134,LOC107669913 coding downstream 306780 5393818 ~ 5403318 (-)
ywhag2 ywhag2,LOC108277419,LOC107582613,LOC100700540,LOC107694031,LOC103021402,LOC101160255,LOC107592751,LOC108437655 coding upstream 21844 5732735 ~ 5743421 (-)
proca1 proca1,LOC108278205,LOC108443503,LOC107582608,LOC107672398,LOC107752378,LOC107694032,LOC106581195 coding upstream 57736 5768627 ~ 5772520 (-)
rab34a rab34a,LOC108278203,LOC107672399,LOC107758713,LOC107657101,LOC108443499 coding upstream 76122 5787013 ~ 5796975 (-)
synrg synrg coding upstream 228161 5939052 ~ 5975719 (-)
hnf1ba hnf1b coding upstream 278527 5989418 ~ 6003349 (-)
G220884 NA non-coding downstream 206156 5503040 ~ 5503942 (-)
G220864 NA non-coding downstream 221090 5488775 ~ 5489008 (-)
G220858 NA non-coding downstream 255175 5454596 ~ 5454923 (-)
G220834 NA non-coding downstream 266396 5443492 ~ 5443702 (-)
G220826 NA non-coding downstream 293103 5416785 ~ 5416995 (-)
G221026 NA non-coding upstream 84237 5795128 ~ 5795453 (-)
G221068 NA non-coding upstream 159510 5870401 ~ 5870627 (-)
G221214 NA non-coding upstream 381022 6091913 ~ 6092434 (-)
G221245 NA non-coding upstream 492173 6203064 ~ 6204930 (-)
G221450 NA non-coding upstream 615200 6326091 ~ 6416808 (-)
nectin3a LOC108278241 other downstream 110723 5550419 ~ 5599375 (-)
LOC113544632 arap1 other downstream 738579 4897950 ~ 4971519 (-)
LOC113544484 NA other downstream 1893263 3740282 ~ 3816835 (-)
igsf11 igsf11 other downstream 1902984 3727377 ~ 3807114 (-)
G219642 NA other downstream 2746748 2887907 ~ 2963350 (-)
LOC113532612 LOC108277970 other upstream 87037 5797928 ~ 5803973 (-)
dynll2a dynll2a,LOC107554284 other upstream 310254 6021145 ~ 6024353 (-)
LOC113532805 NA other upstream 908281 6619172 ~ 6653418 (-)
zgc:77784 LOC108277423 other upstream 1681524 7392415 ~ 7463499 (-)
sorl1 sorl1,LOC107717255 other upstream 2693938 8404829 ~ 8478912 (-)

Expression


Co-expression Network