LOC113532612 (LOC108277970)


Basic Information

Item Value
gene id LOC113532612
gene name LOC108277970
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 5797928 ~ 5803973 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU261738
CTCTCACACCACTCAGCCTGCAGGAGCTGCAGCAGCACAAGTCTTCTCAGCACAAGGGAGGGGAATAATGCACAGAATTAAGACTCCCTCACTGCCTCAGGGAGCTGAGAAATGCAAGACAATGTGTGACGGCTAATAAAGAATACAAAGAGGGGCAAGAAAGACCAAACAGTGAAGGGATAGCCTTAGGAAGCCCAGAGCACACCACAGGGGACGTTACGAAGGAAGGCGGGAGAAGATGGATGGAATATTTTTAATGGTGGATCAGAACCCTGTTTTCTCTGTGTTGTTGTTCTCACTCATGTTCAGGGTGGTCCATCACCTCCTGAGGAAGCTGCCCCTGCCTAAAGTAGTAGAGCATGATGAGCTTCGCTCCTGGAAGTGGAGAAACCTCAGTGTGTCTCTGGTCCATTCACTGCTCACCGGCCCATGGGCCATCACCTGTGTGAGCCTATGGCCAGAGACGCTGAGGAACATGCACTCTTTCTCCACACCAGTCTGCTACCTGCTTGTGAGTGTTTCAGCAGGTTACTTTGTGCAAGATGCCGGTGACATCATATTTTCAGGCCATGCCCTAGGATCATGGGAGTTCCTGCTCCATCACTTCTTGGTGCCCAGTTTTACATAACCTATTATATCATCATCAACTTCTCCTTGCTGCAACATGGCAGCTACTTCCTGCTCACCGTGCTCCTCATGGATACCATGATCCTCATCTACTTCTACCGATTGCTCAGGGCTGACTTTTGCCCCAGAGGGAAGGGCCACGTCATACAGAATGGCGCTCACCGCAGCAGCTCCTCTCAGCTCTTTGATGACTGATCAGACCTTGGAAGATGAATAAAAACCCGACTGTCTACTTCATTACCCTCAGTTTAAGACTGTGTTTTCACCTGGTCATTTCAGTGTCTTGTATCTGGGCCGTATCCTGATAAGAATCGTATGAATTTATACCTGTAGTAAAGGCGTCTTGACATGCATTAGCCAGGCTGAAATCTGATTTCAGtattacacattaatatacTATGAATTAATCAGCTCATTACATTCTACTTCCTGTAGTATTCCTTGTTTTTAGTTCTTTTATGCAAAAGAGGGTTACTGCATCAAAAATCAAGATGTGTGCATTCAAACATTTGGCTTGGGgagatgaatacatttacaCTTATATAACAGGTAGCTAAAACATGTTTCATACATCCTTTTGATGTGGTTTGAGTAattagatataaataaattttaaaagcGTCCTGAGTGCAAttacacatgcatttttttgtggATAATCTCCATCCAGATATAATCCTCATATTCAAGACGCATGAAACAACCAAGTGTAATAAAAGTCTTAATTTAATGGTTTTGTGTAGCCCAGTTCACTGGGACATGTGTTTACCCTGAAAATCTATGACTGCCTCTCTCTGCCTTCTCTCAAGAGCTCCTCAAGAATCTCACTGCCTCCTGTGTTTGTACAATTGTGATTAATGTCTAATGGGGTGTGGGTAAGCTATATGGCCTTCACTGTCAGGCCTTGTGGACCAACTTCATGGTtgtaaacaaaacaagcaaTAATGTAGCATTGAATGGCAGACACTTTTAAAGAATCTTGTTATACCGTAGATAATGTTCACCTTTTTGAGATGGAAGTTTGTAATTCATATTTACAGTCATAATAGACATAACAGTACATGTCTGCTAATCTCCAGGCTGGAAATCTAAACTGTCTATGTGTCATTTGATTACTTTGGCTGTGCTTTAAAAATACACTTCACATagaaaaagtgacatttttataTGAAGCAGCCCCCATGTCCTAGCTTTTTGACAACTGATTGATTAAACTCCTCAAACACAATCAAATAACAAAGCGAATTAATTCAAACTGGTAAATAGTGGTGAATGAAAATTTCTTTTATGAGAGAAGCTGTGGCTTTGTTGATATAATTGAAGAGCTAGATACAGTTAGACAGCTAATAGCTAGACTGGACAACTAAAGTAGCTAGATATCCATGGGCCATTTGTGAGTGCTaccattttaaataacatgctGACGGTCCTCAAACAACAAAGCCTGTCCAAacaatgttttcttattttcaagTATTAAAAGCACATAGGCTGTGTAGTCAGTAGAGCTGCAAAGTATTACAAACTGAAGGAATGATGCAGTGGTGTGCTGTGTTGCAGTGTTCTGGTTTTTTTGCATgtacaaaagcacaaaaagatGATTTTGAAAGATTACCATGTACATATACCTTACTCATTCCTTACCTTATTTATTGCAGCTTGTGGAAGTATTTCTTCCAGGCTATGGGGGTCTGTGAATTCATTAAGTCACCATTTGAAGATCTGCACTGAGaagttattctttttttttcttctttactgCAGATCGGAACTGTGACTTAAACATAAAGGGTTAGAGTCAAATGAGCCTTATGATGAGTGAAGACTTTGAACAGGCCTTTAGACTTCAGAGTGTGAAcc
>XM_026924051.2
TCAGTGCCTGGCCATTTTTGAGCTCACACCCCTCCCTTTTCTCCTCTCCTGTCTTCTCCTCGCTCTTCTCCACTCCCCCTCTTTTTCCATCACCCCTCTCACACCACTCAGCCTGCAGGAGCTGCAGCAGCACAAGTCTTCTCAGCACAAGGGAGGGGAATAATGCACAGAATTAAGACTCCCTCACTGCCTCAGGGAGCTGAGAAATGCAAGACAATGTGTGACGGCTAATAAAGAATACAAAGAGGGGCAAGAAAGACCAAACAGTGAAGGGATAGCCTTAGGAAGCCCAGAGCACACCACAGGGGACGTTACGAAGGAAGGCGGGAGAAGATGGATGGAATATTTTTAATGGTGGATCAGAACCCTGTTTTCTCTGTGTTGTTGTTCTCACTCATGTTCAGGGTGGTCCATCACCTCCTGAGGAAGCTGCCCCTGCCTAAAGTAGTAGAGCATGATGAGCTTCGCTCCTGGAAGTGGAGAAACCTCAGTGTGTCTCTGGTCCATTCACTGCTCACCGGCCCATGGGCCATCACCTGTGTGAGCCTATGGCCAGAGACGCTGAGGAACATGCACTCTTTCTCCACACCAGTCTGCTACCTGCTTGTGAGTGTTTCAGCAGGTTACTTTGTGCAAGATGCCGGTGACATCATATTTTCAGGCCATGCCCTAGGATCATGGGAGTTCCTGCTCCATCACTTCTTGGTGTTGTGGTGCTTCCTGTACAATCTGTACACCCAGCGCTATGTGGCTGGAGCAGTGGTTGCCCTCCTGGTGGAGGTCAACAGCATGACCCTGCATGCACGGCTGCTGCTGAAACTGGCAGGAGCCCAGGGGTCACGGCTCTACCATGCCAACAAGTTCCTCAACCTTTTCACGTATGTCACCTTCCGTCTAGGTGCCCAGTTTTACATAACCTATTATATCATCATCAACTTCTCCTTGCTGCAACATGGCAGCTACTTCCTGCTCACCGTGCTCCTCATGGATACCATGATCCTCATCTACTTCTACCGATTGCTCAGGGCTGACTTTTGCCCCAGAGGGAAGGGCCACGTCATACAGAATGGCGCTCACCGCAGCAGCTCCTCTCAGCTCTTTGATGACTGATCAGACCTTGGAAGATGAATAAAAACCCGACTGTCTACTTCATTACCCTCAGTTTAAGACTGTGTTTTCACCTGGTCATTTCAGTGTCTTGTATCTGGGCCGTATCCTGATAAGAATCGTATGAATTTATACCTGTAGTAAAGGCGTCTTGACATGCATTAGCCAGGCTGAAATCTGATTTCAGtattacacattaatatacTATGAATTAATCAGCTCATTACATTCTACTTCCTGTAGTATTCCTTGTTTTTAGTTCTTTTATGCAAAAGAGGGTTACTGCATCAAAAATCAAGATGTGTGCATTCAAACATTTGGCTTGGGgagatgaatacatttacaCTTATATAACAGGTAGCTAAAACATGTTTCATACATCCTTTTGATGTGGTTTGAGTAattagatataaataaattttaaaagcGTCCTGAGTGCAAttacacatgcatttttttgtggATAATCTCCATCCAGATATAATCCTCATATTCAAGACGCATGAAACAACCAAGTGTAATAAAAGTCTTAATTTAATGGTTTTGTGTAGCCCAGTTCACTGGGACATGTGTTTACCCTGAAAATCTATGACTGCCTCTCTCTGCCTTCTCTCAAGAGCTCCTCAAGAATCTCACTGCCTCCTGTGTTTGTACAATTGTGATTAATGTCTAATGGGGTGTGGGTAAGCTATATGGCCTTCACTGTCAGGCCTTGTGGACCAACTTCATGGTtgtaaacaaaacaagcaaTAATGTAGCATTGAATGGCAGACACTTTTAAAGAATCTTGTTATACCGTAGATAATGTTCACCTTTTTGAGATGGAAGTTTGTAATTCATATTTACAGTCATAATAGACATAACAGTACATGTCTGCTAATCTCCAGGCTGGAAATCTAAACTGTCTATGTGTCATTTGATTACTTTGGCTGTGCTTTAAAAATACACTTCACATagaaaaagtgacatttttataTGAAGCAGCCCCCATGTCCTAGCTTTTTGACAACTGATTGATTAAACTCCTCAAACACAATCAAATAACAAAGCGAATTAATTCAAACTGGTAAATAGTGGTGAATGAAAATTTCTTTTATGAGAGAAGCTGTGGCTTTGTTGATATAATTGAAGAGCTAGATACAGTTAGACAGCTAATAGCTAGACTGGACAACTAAAGTAGCTAGATATCCATGGGCCATTTGTGAGTGCTaccattttaaataacatgctGACGGTCCTCAAACAACAAAGCCTGTCCAAacaatgttttcttattttcaagTATTAAAAGCACATAGGCTGTGTAGTCAGTAGAGCTGCAAAGTATTACAAACTGAAGGAATGATGCAGTGGTGTGCTGTGTTGCAGTGTTCTGGTTTTTTTGCATgtacaaaagcacaaaaagatGATTTTGAAAGATTACCATGTACATATACCTTACTCATTCCTTACCTTATTTATTGCAGCTTGTGGAAGTATTTCTTCCAGGCTATGGGGGTCTGTGAATTCATTAAGTCACCATTTGAAGATCTGCACTGAGaagttattctttttttttcttctttactgCAGATCGGAACTGTGACTTAAACATAAAGGGTTAGAGTCAAATGAGCCTTATGATGAGTGAAGACTTTGAACAGGCCTTTAGACTTCAGAGTGTGAAcctgacattatttattgtgtttgcATAAAATTATTGTGAATAAACTTGTGCTCAAATAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU261738 False 2487 TUCP 0.41 4 5797985 5803878
XM_026924051.2 True 2832 mRNA 0.42 4 5797928 5803973

Neighbor

gene id symbol gene type direction distance location
rab34a rab34a,LOC108278203,LOC107672399,LOC107758713,LOC107657101,LOC108443499 coding downstream 953 5787013 ~ 5796975 (-)
proca1 proca1,LOC108278205,LOC108443503,LOC107582608,LOC107672398,LOC107752378,LOC107694032,LOC106581195 coding downstream 25408 5768627 ~ 5772520 (-)
ywhag2 ywhag2,LOC108277419,LOC107582613,LOC100700540,LOC107694031,LOC103021402,LOC101160255,LOC107592751,LOC108437655 coding downstream 54507 5732735 ~ 5743421 (-)
LOC113532847 LOC108277604 coding downstream 175457 5621506 ~ 5622471 (-)
diabloa LOC108278350 coding downstream 188913 5606704 ~ 5609015 (-)
synrg synrg coding upstream 135079 5939052 ~ 5975719 (-)
hnf1ba hnf1b coding upstream 185445 5989418 ~ 6003349 (-)
srsf1a srsf1b,LOC108278234,LOC108415197,LOC108278759,LOC107704814,LOC107587230 coding upstream 221490 6025463 ~ 6028603 (-)
aldoca aldoca,LOC108277446,LOC108415199,LOC107727913,LOC107661107,LOC107714247 coding upstream 225273 6029246 ~ 6033511 (-)
rskra LOC108277445 coding upstream 231100 6035073 ~ 6047606 (-)
G221026 NA non-coding downstream 2475 5795128 ~ 5795453 (-)
G220884 NA non-coding downstream 293986 5503040 ~ 5503942 (-)
G220864 NA non-coding downstream 308920 5488775 ~ 5489008 (-)
G220858 NA non-coding downstream 343005 5454596 ~ 5454923 (-)
G220834 NA non-coding downstream 354226 5443492 ~ 5443702 (-)
G221068 NA non-coding upstream 66428 5870401 ~ 5870627 (-)
G221214 NA non-coding upstream 287940 6091913 ~ 6092434 (-)
G221245 NA non-coding upstream 399091 6203064 ~ 6204930 (-)
G221450 NA non-coding upstream 522118 6326091 ~ 6416808 (-)
G221461 NA non-coding upstream 612909 6416882 ~ 6417625 (-)
G220990 NA other downstream 87037 5710098 ~ 5710891 (-)
nectin3a LOC108278241 other downstream 198553 5550419 ~ 5599375 (-)
LOC113544632 arap1 other downstream 826409 4897950 ~ 4971519 (-)
LOC113544484 NA other downstream 1981093 3740282 ~ 3816835 (-)
igsf11 igsf11 other downstream 1990814 3727377 ~ 3807114 (-)
dynll2a dynll2a,LOC107554284 other upstream 217172 6021145 ~ 6024353 (-)
LOC113532805 NA other upstream 815199 6619172 ~ 6653418 (-)
zgc:77784 LOC108277423 other upstream 1588442 7392415 ~ 7463499 (-)
sorl1 sorl1,LOC107717255 other upstream 2600856 8404829 ~ 8478912 (-)
G222809 oaf other upstream 3137045 8941018 ~ 8946899 (-)

Expression


Co-expression Network