G221068


Basic Information

Item Value
gene id G221068
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 5870401 ~ 5870627 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU261757
atctaatcaaaataaagcagtttactgctgaaagtctacacaggCGCCAAATGCTTcgtcagcagcagcaatgtctgagacagtggagacaatTTAACATCTCTGGCCCAATTTACCAGGaaacttcagttttaaatgcttcagaGGAAACAACGTGATTATGATCTGCAAATTATGGGAGCCAAAACCCAAGGAGAACCCAGAGGTGATTGCCTGTTGAGTTAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU261757 True 227 lncRNA 0.42 1 5870401 5870627

Neighbor

gene id symbol gene type direction distance location
rab34a rab34a,LOC108278203,LOC107672399,LOC107758713,LOC107657101,LOC108443499 coding downstream 73426 5787013 ~ 5796975 (-)
proca1 proca1,LOC108278205,LOC108443503,LOC107582608,LOC107672398,LOC107752378,LOC107694032,LOC106581195 coding downstream 97881 5768627 ~ 5772520 (-)
ywhag2 ywhag2,LOC108277419,LOC107582613,LOC100700540,LOC107694031,LOC103021402,LOC101160255,LOC107592751,LOC108437655 coding downstream 126980 5732735 ~ 5743421 (-)
LOC113532847 LOC108277604 coding downstream 247930 5621506 ~ 5622471 (-)
diabloa LOC108278350 coding downstream 261386 5606704 ~ 5609015 (-)
synrg synrg coding upstream 68425 5939052 ~ 5975719 (-)
hnf1ba hnf1b coding upstream 118791 5989418 ~ 6003349 (-)
srsf1a srsf1b,LOC108278234,LOC108415197,LOC108278759,LOC107704814,LOC107587230 coding upstream 154836 6025463 ~ 6028603 (-)
aldoca aldoca,LOC108277446,LOC108415199,LOC107727913,LOC107661107,LOC107714247 coding upstream 158619 6029246 ~ 6033511 (-)
rskra LOC108277445 coding upstream 164446 6035073 ~ 6047606 (-)
G221026 NA non-coding downstream 74948 5795128 ~ 5795453 (-)
G220884 NA non-coding downstream 366459 5503040 ~ 5503942 (-)
G220864 NA non-coding downstream 381393 5488775 ~ 5489008 (-)
G220858 NA non-coding downstream 415478 5454596 ~ 5454923 (-)
G220834 NA non-coding downstream 426699 5443492 ~ 5443702 (-)
G221214 NA non-coding upstream 221286 6091913 ~ 6092434 (-)
G221245 NA non-coding upstream 332437 6203064 ~ 6204930 (-)
G221450 NA non-coding upstream 455464 6326091 ~ 6416808 (-)
G221461 NA non-coding upstream 546255 6416882 ~ 6417625 (-)
G221448 dnhd1 non-coding upstream 643201 6513828 ~ 6514965 (-)
LOC113532612 LOC108277970 other downstream 66428 5797928 ~ 5803973 (-)
G220990 NA other downstream 159510 5710098 ~ 5710891 (-)
nectin3a LOC108278241 other downstream 271026 5550419 ~ 5599375 (-)
LOC113544632 arap1 other downstream 898882 4897950 ~ 4971519 (-)
LOC113544484 NA other downstream 2053566 3740282 ~ 3816835 (-)
dynll2a dynll2a,LOC107554284 other upstream 150518 6021145 ~ 6024353 (-)
LOC113532805 NA other upstream 748545 6619172 ~ 6653418 (-)
zgc:77784 LOC108277423 other upstream 1521788 7392415 ~ 7463499 (-)
sorl1 sorl1,LOC107717255 other upstream 2534202 8404829 ~ 8478912 (-)
G222809 oaf other upstream 3070391 8941018 ~ 8946899 (-)

Expression


Co-expression Network