dynll2a (dynll2a,LOC107554284)


Basic Information

Item Value
gene id dynll2a
gene name dynll2a,LOC107554284
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 6021145 ~ 6024353 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU261846
GCCAATGGAAAGCGCGCGCTGGAGAGCAGCGGAACCGAGCAGAGGAACCGAGCAGCGCTTCAGACTCTGTGTTTGAGTTCCTGTAGACACAAAGCTCATCCTGACAGGACGCGAGAAAAATACAAGCATCCAAACTCGGGCTGCTGTGAATATTTCtgcttcttattcttcttatttgCTAAGGACACCTGATCGACTGCAGCATTATGACTGACAGGAAAGCTGTGATCAAGAATGCTGACATGTCTGAGGACATGCAGCAGGATGCAGTTGACTGTGCAACACAGGCCATGGAGAAGTACAACATTGAGAAGGACATCGCAGCATACATCAAAAAGGAGTTTGACAAGAAGTACAACCCAACATGGCATTGCATTGTGGGAAGAAACTTTGGCAGCTATGTCACCCATGAGACGAAGCACTTCATCTACTTCTACTTGGGCCAGGTGGCCATCCTCCTGTTCAAATCCGGCTGATGTCTTACAGCGAGAGTAGAATGTTCTTTTCCAACATGGACCAAGATGCACTAGTGGCCAATGTCCTGTCTAACCACATGCTACAAATATTAAACAAGGCCATACCATGACTATGCTGACTGTGCGTAACTGCATGGGCCGTATACCATACTAATTGTGCATATGTTGAGGTTAAGTTGCTTTTCAGTAGGTGTCCCATGTTTATCGGGAGAGTTTTTGTTTCTGGTCCTGACGAGTTTGTTCGAGCATAGGAGCTGTGAAGGCAGGCGTGATGTTGATTAAATAAAGCAATTCAGATGAACTCCAAAAAGTGCatctgtattatttttcttctaagAGCTGTTTTGTTTAAGTAGTCTTTGCTGCCATGTAGTTCTAACGAGCACGGGGTGTGTCTGTACCGTGGTGGAGATggagaataaagaaaataagtCATGTTTATGTGGGTTCATCTAAGGTTAGGTGATTATTATTGTCGATTGTTTCATGTCATTGGTTTGGAGATGGTGCTTGTATGCTAGGGAACAGATGGGTTACAGATGCACAAATCACACTCTTATTCTGTGAAACTGCATTtcctttttgtttaaaatgtcttacaAGGTTACAAGTGCATTATGTCTGTTGGGGAATAATCTAAGATATATTAAACGAACTGCTTTTCCagctttattttgtgtttaatttcttCATTATGTCAGTTGCCGAACATAAAGGGACTCTGCACACAATATTCTCCAGCTCTTTCAGTCTGCTATTAAAGTTGGAATTATTTAGATGTTTAGCatttagcatgttttttttctctacatatGAGGTGTAGGTTTTTGTTACTTGTCTGTATTTGCTATTTCTGTATATTGCACATGACTTCAAGCCTCCCTCTATTGGTAGGCCTGTGAAACACTTGCACTCCATTTCACTGTACCCTCTCAGGTACTGCCCATGACAAAAAGCAGATCAGTCATTAACATGTGTAAATGTCCTCTGGG
>XM_026923900.2
GGAAAACGCGCGCGCACCACACGGCGGAGGCGGAGAGCTGCAGCCAATGGAAAGCGCGCGCTGGAGAGCAGCGGAACCGAGCAGAGGAACCGAGCAGCGCTTCAGACTCTGTGTTTGAGTTCCTGTAGACACAAAGCTCATCCTGACAGGACGCGAGAAAAATACAAGCATCCAAACTCGGGCTGCTGTGAATATTTCtgcttcttattcttcttatttgCTAAGGACACCTGATCGACTGCAGCATTATGACTGACAGGAAAGCTGTGATCAAGAATGCTGACATGTCTGAGGACATGCAGCAGGATGCAGTTGACTGTGCAACACAGGCCATGGAGAAGTACAACATTGAGAAGGACATCGCAGCATACATCAAAAAGGAGTTTGACAAGAAGTACAACCCAACATGGCATTGCATTGTGGGAAGAAACTTTGGCAGCTATGTCACCCATGAGACGAAGCACTTCATCTACTTCTACTTGGGCCAGGTGGCCATCCTCCTGTTCAAATCCGGCTGATGTCTTACAGCGAGAGTAGAATGTTCTTTTCCAACATGGACCAAGATGCACTAGTGGCCAATGTCCTGTCTAACCACATGCTACAAATATTAAACAAGGCCATACCATGACTATGCTGACTGTGCGTAACTGCATGGGCCGTATACCATACTAATTGTGCATATGTTGAGGTTAAGTTGCTTTTCAGTAGGTGTCCCATGTTTATCGGGAGAGTTTTTGTTTCTGGTCCTGACGAGTTTGTTCGAGCATAGGAGCTGTGAAGGCAGGCGTGATGTTGATTAAATAAAGCAATTCAGATGAACTCCAAAAAGTGCatctgtattatttttcttctaagAGCTGTTTTGTTTAAGTAGTCTTTGCTGCCATGTAGTTCTAACGAGCACGGGGTGTGTCTGTACCGTGGTGGAGATggagaataaagaaaataagtCATGTTTATGTGGGTTCATCTAAGGTTAGGTGATTATTATTGTCGATTGTTTCATGTCATTGGTTTGGAGATGGTGCTTGTATGCTAGGGAACAGATGGGTTACAGATGCACAAATCACACTCTTATTCTGTGAAACTGCATTtcctttttgtttaaaatgtcttacaAGGTTACAAGTGCATTATGTCTGTTGGGGAATAATCTAAGATATATTAAACGAACTGCTTTTCCagctttattttgtgtttaatttcttCATTATGTCAGTTGCCGAACATAAAGGGACTCTGCACACAATATTCTCCAGCTCTTTCAGTCTGCTATTAAAGTTGGAATTATTTAGATGTTTAGCatttagcatgttttttttctctacatatGAGGTGTAGGTTTTTGTTACTTGTCTGTATTTGCTATTTCTGTATATTGCACATGACTTCAAGCCTCCCTCTATTGGTAGGCCTGTGAAACACTTGCACTCCATTTCACTGTACCCTCTCAGGTACTGCCCATGACAAAAAGCAGATCAGTCATTAACATGTGTAAATGTCCTCTGGGTTTTGTTTGCCTAAGTAATTTTGCTGTATTGTGTAATATCAATAAAGACTATAGTTGCACATTGGAGAAACAGGA

Function

symbol description
dynll2a Predicted to enable cytoskeletal motor activity. Predicted to act upstream of or within microtubule-based process. Located in P granule and nucleus. Is expressed in central nervous system; hindbrain; lateral line ganglion; polster; and rhombomere. Orthologous to human DYNLL2 (dynein light chain LC8-type 2).

NR:

description
PREDICTED: dynein light chain 2, cytoplasmic-like

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0005875 microtubule associated complex cellular_component
GO:0005634 nucleus cellular_component
GO:0043186 P granule cellular_component

KEGG:

id description
K10418 DYNLL; dynein light chain LC8-type

RNA

RNA id representative length rna type GC content exon number start site end site
TU261846 False 1468 TUCP 0.42 3 6021220 6024311
XM_026923900.2 True 1585 mRNA 0.42 3 6021145 6024353

Neighbor

gene id symbol gene type direction distance location
hnf1ba hnf1b coding downstream 17796 5989418 ~ 6003349 (-)
synrg synrg coding downstream 45426 5939052 ~ 5975719 (-)
rab34a rab34a,LOC108278203,LOC107672399,LOC107758713,LOC107657101,LOC108443499 coding downstream 224170 5787013 ~ 5796975 (-)
proca1 proca1,LOC108278205,LOC108443503,LOC107582608,LOC107672398,LOC107752378,LOC107694032,LOC106581195 coding downstream 248625 5768627 ~ 5772520 (-)
ywhag2 ywhag2,LOC108277419,LOC107582613,LOC100700540,LOC107694031,LOC103021402,LOC101160255,LOC107592751,LOC108437655 coding downstream 277724 5732735 ~ 5743421 (-)
srsf1a srsf1b,LOC108278234,LOC108415197,LOC108278759,LOC107704814,LOC107587230 coding upstream 1110 6025463 ~ 6028603 (-)
aldoca aldoca,LOC108277446,LOC108415199,LOC107727913,LOC107661107,LOC107714247 coding upstream 4893 6029246 ~ 6033511 (-)
rskra LOC108277445 coding upstream 10720 6035073 ~ 6047606 (-)
LOC113532842 kiaa0100,LOC107661106,LOC107727920 coding upstream 25100 6049453 ~ 6080648 (-)
glod4 glod4,LOC102784280 coding upstream 59387 6083740 ~ 6087090 (-)
G221068 NA non-coding downstream 150518 5870401 ~ 5870627 (-)
G221026 NA non-coding downstream 225692 5795128 ~ 5795453 (-)
G220884 NA non-coding downstream 517203 5503040 ~ 5503942 (-)
G220864 NA non-coding downstream 532137 5488775 ~ 5489008 (-)
G220858 NA non-coding downstream 566222 5454596 ~ 5454923 (-)
G221214 NA non-coding upstream 67560 6091913 ~ 6092434 (-)
G221245 NA non-coding upstream 178711 6203064 ~ 6204930 (-)
G221450 NA non-coding upstream 301738 6326091 ~ 6416808 (-)
G221461 NA non-coding upstream 392529 6416882 ~ 6417625 (-)
G221448 dnhd1 non-coding upstream 489475 6513828 ~ 6514965 (-)
LOC113532612 LOC108277970 other downstream 217172 5797928 ~ 5803973 (-)
G220990 NA other downstream 310254 5710098 ~ 5710891 (-)
nectin3a LOC108278241 other downstream 421770 5550419 ~ 5599375 (-)
LOC113544632 arap1 other downstream 1049626 4897950 ~ 4971519 (-)
LOC113544484 NA other downstream 2204310 3740282 ~ 3816835 (-)
LOC113532805 NA other upstream 594819 6619172 ~ 6653418 (-)
zgc:77784 LOC108277423 other upstream 1368062 7392415 ~ 7463499 (-)
sorl1 sorl1,LOC107717255 other upstream 2380476 8404829 ~ 8478912 (-)
G222809 oaf other upstream 2916665 8941018 ~ 8946899 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other upstream 3652906 9677259 ~ 9713059 (-)

Expression


Co-expression Network