G221214


Basic Information

Item Value
gene id G221214
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 6091913 ~ 6092434 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU261950
aacaggaaggaagctattgaagaaaaactattcagacatttgaccttgctatGACATTGTCTCTGTTTGGATTAATTCCAAAATCTGATCAGTTCATCTGCAGGTTACAGTGATTCTATAGAAATCCTACATTCAACCCCTCGTTCTTGAGATACAGCATTAACGATGTTTTCAGCAGGACGGACGGACAGAGAACCCGAAAACCTGATTCCTCCTCCACCTAGTGGCGGAGACATTAAAATACATGTCAAGAGTTCATTACCTGgggagacAAGTATCTGTGAAATAAAGGAACAATACTGTGggtgaacaaatgaaaaacaaatctaGACCATTAAAGGTtatgataaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU261950 True 352 lncRNA 0.39 2 6091913 6092434

Neighbor

gene id symbol gene type direction distance location
glod4 glod4,LOC102784280 coding downstream 4823 6083740 ~ 6087090 (-)
LOC113532842 kiaa0100,LOC107661106,LOC107727920 coding downstream 11265 6049453 ~ 6080648 (-)
rskra LOC108277445 coding downstream 44307 6035073 ~ 6047606 (-)
aldoca aldoca,LOC108277446,LOC108415199,LOC107727913,LOC107661107,LOC107714247 coding downstream 58402 6029246 ~ 6033511 (-)
srsf1a srsf1b,LOC108278234,LOC108415197,LOC108278759,LOC107704814,LOC107587230 coding downstream 63310 6025463 ~ 6028603 (-)
nxn nxn,typx coding upstream 2236 6094670 ~ 6156851 (-)
txndc17 txndc17,LOC107661118,LOC107727907 coding upstream 66414 6158848 ~ 6161315 (-)
fam222bb LOC108277976 coding upstream 89614 6182048 ~ 6188370 (-)
caln1 caln1,LOC108277467,LOC107582596,LOC107554278,LOC107659935,LOC108443712,LOC107672359,LOC103034584 coding upstream 140814 6233248 ~ 6298950 (-)
tyw1 LOC108278267,LOC108443711,LOC107716137 coding upstream 212924 6305358 ~ 6382839 (-)
G221068 NA non-coding downstream 221286 5870401 ~ 5870627 (-)
G221026 NA non-coding downstream 296460 5795128 ~ 5795453 (-)
G220884 NA non-coding downstream 587971 5503040 ~ 5503942 (-)
G220864 NA non-coding downstream 602905 5488775 ~ 5489008 (-)
G220858 NA non-coding downstream 636990 5454596 ~ 5454923 (-)
G221245 NA non-coding upstream 110630 6203064 ~ 6204930 (-)
G221450 NA non-coding upstream 233657 6326091 ~ 6416808 (-)
G221461 NA non-coding upstream 324448 6416882 ~ 6417625 (-)
G221448 dnhd1 non-coding upstream 421394 6513828 ~ 6514965 (-)
G221618 NA non-coding upstream 595155 6687589 ~ 6688311 (-)
dynll2a dynll2a,LOC107554284 other downstream 67560 6021145 ~ 6024353 (-)
LOC113532612 LOC108277970 other downstream 287940 5797928 ~ 5803973 (-)
G220990 NA other downstream 381022 5710098 ~ 5710891 (-)
nectin3a LOC108278241 other downstream 492538 5550419 ~ 5599375 (-)
LOC113544632 arap1 other downstream 1120394 4897950 ~ 4971519 (-)
LOC113532805 NA other upstream 526738 6619172 ~ 6653418 (-)
zgc:77784 LOC108277423 other upstream 1299981 7392415 ~ 7463499 (-)
sorl1 sorl1,LOC107717255 other upstream 2312395 8404829 ~ 8478912 (-)
G222809 oaf other upstream 2848584 8941018 ~ 8946899 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other upstream 3584825 9677259 ~ 9713059 (-)

Expression


Co-expression Network