G221245


Basic Information

Item Value
gene id G221245
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 6203064 ~ 6204930 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU261982
GAGcacttaacatttattttatttgaacacACATGCAAAAGATCCATGCACAGTTAAACGTTAGGAAAAATGTTGGTACATTTTAGGATAAGGTCTAATATATGACAcaaaacattttgacattttgtgttttaacAAATGACATATCATCTAAAATGATGTATGGGTTCATAATGCTATGGCTTTAACAGTCCTGACTTTTAAGTAGAGACCAAAGCTCAGTATAAATGCAGTATTAACATAAATCAACCCTGAAACAGATGTAGTCTGATTGCAGAAAAcctttactttaatttaaatgctgacttttttttcccttgctcTTTTGTATGAACTTGTTTAAGCAAATGTTCTGTCAATAAAGCAAAATGATTGCCACTAATGtgtactgtgtctgtgtgtgtgtgtggttttggttTTCAGTCTCATAAATGAATCACCTAAGAACAAATGACTGATTTCTTGGCTTCATTGTCTGTAGTCAACATTagtttataagaaaaataatacaacaAGGATATAACTTACTTCCACTCACAGCACAACTGAGCGTGGCACAACACACATTAACaaattctaaaagaaaaaaagacataacTTTCACAGTGACAGATCACATATACCATGTAGAAACTTTTATGACTATACATATaatgtgacaaaaataaattcacaaatacatttacagtgGCAGCTCTGTGGATAAGGTTCTGCAGTGGTAACAGGGAAGGTTGTCAGTTCAAACAGCAGCACTACCAGAGAGGTCCTTttccctcaactgctcagcgcTTTATTTGGAATGTATACTGTATTTGAGACTAAAAACAATTTGCTGTGCCTAATGTAAATATAGTAGCATTAACAAATTCTGATAGGTCACATATTTATCAGATTGACAGATGGGCATCCTGGGACTTGTAACTAGAATCAGACCAGTGACATTAGACTCTGCAATCCTTCACCATCCCTGATCgctgcatttcattataaagAAAACCTCCAGCTCCATAACACATCATGCCCCTTTCCATTTGCCTTCTAAAGCGAAAAAATAAACTCACAACACTGGCTGTGTTTTCCAAAACAGTGCATTAATCCTTAAACACATCACAGTTAAAATGTCATTGACTAACGAAACACAGAGTCAGTCgaacaattttaaacattagCAAAAGATAATATTCCATGCAGGAATATCTGAGTTTGACTTGTGAGTTCGTATCCAGATAATTATTCAGCTAACAATATAggctgaaagagagaagaagaagtagCACTTGGTTGATTGCATCTACAAGCACAACAGAAGTTATCTGTAAGACCAGAGAATTCACTGCCTTAAAATAGTACTCTGTAGACTTTAATGCAAGTGGCAATTTTAGCATTTCCTGAATAGTGTAAGGTCTGTAACATCAGCAGCTGCTCTACAGGCagctaaaaatataattaaaaaaatgtcctataaaaaaaaactgtaactgaTGAAATGGGTTCACATGCATATAAAATACAATGGTACAATGAAAAATCTGTACGTCTGTATCTTTCAGTATGTACCAAtcaatcacaaataaataacaacaacataTAAACATGAACAGGAAATGAGGAGCAGCAGTACATGCAAATGTTCTGGTCCTATAAAACATTAAGGCACCAGAGGTATCAAAAATCATTTCTGAACttcactattttaacttttaGTGTTCCAAAGGCATTCATAGTGAGTGCATAAAACATATTGAGAGGAAGAGGGATCTAATCTGATCACATCTCAGGCTTGAGCATTGGTCATCTTCTGCAGCAGAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU261982 True 1810 lncRNA 0.35 2 6203064 6204930

Neighbor

gene id symbol gene type direction distance location
fam222bb LOC108277976 coding downstream 14694 6182048 ~ 6188370 (-)
txndc17 txndc17,LOC107661118,LOC107727907 coding downstream 41749 6158848 ~ 6161315 (-)
nxn nxn,typx coding downstream 46213 6094670 ~ 6156851 (-)
glod4 glod4,LOC102784280 coding downstream 115974 6083740 ~ 6087090 (-)
LOC113532842 kiaa0100,LOC107661106,LOC107727920 coding downstream 122416 6049453 ~ 6080648 (-)
caln1 caln1,LOC108277467,LOC107582596,LOC107554278,LOC107659935,LOC108443712,LOC107672359,LOC103034584 coding upstream 28318 6233248 ~ 6298950 (-)
tyw1 LOC108278267,LOC108443711,LOC107716137 coding upstream 100428 6305358 ~ 6382839 (-)
zgc:103681 LOC108277991,LOC108443709,LOC103035104 coding upstream 181249 6386179 ~ 6394307 (-)
hip1 hip1,LOC107714882,LOC107659933,LOC107672373 coding upstream 242195 6447125 ~ 6488585 (-)
mos mos coding upstream 306306 6511236 ~ 6513733 (-)
G221214 NA non-coding downstream 110630 6091913 ~ 6092434 (-)
G221068 NA non-coding downstream 332437 5870401 ~ 5870627 (-)
G221026 NA non-coding downstream 407611 5795128 ~ 5795453 (-)
G220884 NA non-coding downstream 699122 5503040 ~ 5503942 (-)
G220864 NA non-coding downstream 714056 5488775 ~ 5489008 (-)
G221450 NA non-coding upstream 121161 6326091 ~ 6416808 (-)
G221461 NA non-coding upstream 211952 6416882 ~ 6417625 (-)
G221448 dnhd1 non-coding upstream 308898 6513828 ~ 6514965 (-)
G221618 NA non-coding upstream 482659 6687589 ~ 6688311 (-)
G221638 NA non-coding upstream 554480 6759410 ~ 6759618 (-)
dynll2a dynll2a,LOC107554284 other downstream 178711 6021145 ~ 6024353 (-)
LOC113532612 LOC108277970 other downstream 399091 5797928 ~ 5803973 (-)
G220990 NA other downstream 492173 5710098 ~ 5710891 (-)
nectin3a LOC108278241 other downstream 603689 5550419 ~ 5599375 (-)
LOC113544632 arap1 other downstream 1231545 4897950 ~ 4971519 (-)
LOC113532805 NA other upstream 414242 6619172 ~ 6653418 (-)
zgc:77784 LOC108277423 other upstream 1187485 7392415 ~ 7463499 (-)
sorl1 sorl1,LOC107717255 other upstream 2199899 8404829 ~ 8478912 (-)
G222809 oaf other upstream 2736088 8941018 ~ 8946899 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other upstream 3472329 9677259 ~ 9713059 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G5947 NA non-coding NC_035897.1 CM008300.1 23577454 ~ 23582204 (-)