G221448 (dnhd1)


Basic Information

Item Value
gene id G221448
gene name dnhd1
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 6513828 ~ 6514965 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU262210
TGAGACTCATGTTGGCttctttgtatttatatatcaaAAGGATAACACTAGATGGCTAATTAGCCACATGTTGTAATTACTTTGGTGATTTCAGGGAAAGTtgttgaagctgttctggcagttagtggcccaacaccttactgaGACACTTTAGATTTGTTACCCATCTGTATAAATACCTACCTTGGCTTACAATGCTAATTTGCCTATAGCTTACTTGATATATGGTGGTCACGTATCAGACTCAGCTGATTTGGAGGCTGTGAAAGCAGTGTGCAGAGTTTGTCTACAACCACCACCATCTACATGGGGTAGTGGCCCTCACCTTCTTTCAGAAATGATCAGCATGAGAGGACATTTTGatgagGACATTCTGAAAGCTGTACAGCACTGCGCTGAAATCACACTGAATAACAATGATACCCTGCTTCTGGGATTCAGTGCAGAGATGAGAAGTGGTATAGTGAAATatagtgagagaaagaaagagggaggacTGGAAGGTCACAGTGGAGGGACTGGTGACAAGGTGGTGGGTGAAATTAGAGCAATTTCTTCCATTAAACAATAGTGaccaatatttatattttggaattTCCATTAAGGTGGTAAATTAATGAATATGTTTCAGCATAGCTGTATGATGTGTTTCAGAAtcctgagagtgagacaggcctCCCTGGGGGTAGAGAGTGAGTAAATCTGAAATGTAATAAACCGTCTAATCCAGGGGCATCAGATATTGGTGTGAGTGCAGGtcttcattccaaccaagcagaagccacgcCTGAGcctactgaaagccaagattaactgattaaacagctggaatcaggtgtggctcctgcttgattggaatgaaaacttgCACCCACACTTtgtggccctttgtggataagattggacatcCCTGATCTAATCTAACTTGTTCTTCTATTGTAATACACACTGGcctaataaataatgtattattttggtCCTAAATGTAAAGAtcttg

Function

symbol description
dnhd1 Predicted to enable dynein intermediate chain binding activity; dynein light intermediate chain binding activity; and minus-end-directed microtubule motor activity. Predicted to be involved in cilium movement. Located in extracellular exosome.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU262210 True 997 lncRNA 0.41 2 6513828 6514965

Neighbor

gene id symbol gene type direction distance location
mos mos coding downstream 95 6511236 ~ 6513733 (-)
hip1 hip1,LOC107714882,LOC107659933,LOC107672373 coding downstream 25243 6447125 ~ 6488585 (-)
zgc:103681 LOC108277991,LOC108443709,LOC103035104 coding downstream 119521 6386179 ~ 6394307 (-)
tyw1 LOC108278267,LOC108443711,LOC107716137 coding downstream 130989 6305358 ~ 6382839 (-)
caln1 caln1,LOC108277467,LOC107582596,LOC107554278,LOC107659935,LOC108443712,LOC107672359,LOC103034584 coding downstream 214878 6233248 ~ 6298950 (-)
mrpl28 mrpl28,LOC107659942,LOC107554268 coding upstream 12507 6527472 ~ 6532884 (-)
cul5a cul5,LOC107554266,LOC107714978,LOC107582587,LOC107701426 coding upstream 21083 6536048 ~ 6554451 (-)
itgae.2 NA coding upstream 43567 6558532 ~ 6579961 (-)
LOC113532622 NA coding upstream 68998 6583963 ~ 6605064 (-)
tubd1 tubd1,LOC107581164 coding upstream 233951 6748916 ~ 6756266 (-)
G221461 NA non-coding downstream 96203 6416882 ~ 6417625 (-)
G221450 NA non-coding downstream 97020 6326091 ~ 6416808 (-)
G221245 NA non-coding downstream 308898 6203064 ~ 6204930 (-)
G221214 NA non-coding downstream 421394 6091913 ~ 6092434 (-)
G221068 NA non-coding downstream 643201 5870401 ~ 5870627 (-)
G221618 NA non-coding upstream 172624 6687589 ~ 6688311 (-)
G221638 NA non-coding upstream 244445 6759410 ~ 6759618 (-)
G221633 NA non-coding upstream 245691 6760656 ~ 6761787 (-)
G221659 NA non-coding upstream 291190 6806155 ~ 6806367 (-)
G221681 NA non-coding upstream 352819 6867784 ~ 6870274 (-)
dynll2a dynll2a,LOC107554284 other downstream 489475 6021145 ~ 6024353 (-)
LOC113532612 LOC108277970 other downstream 709855 5797928 ~ 5803973 (-)
G220990 NA other downstream 802937 5710098 ~ 5710891 (-)
nectin3a LOC108278241 other downstream 914453 5550419 ~ 5599375 (-)
LOC113544632 arap1 other downstream 1542309 4897950 ~ 4971519 (-)
LOC113532805 NA other upstream 104207 6619172 ~ 6653418 (-)
zgc:77784 LOC108277423 other upstream 877450 7392415 ~ 7463499 (-)
sorl1 sorl1,LOC107717255 other upstream 1889864 8404829 ~ 8478912 (-)
G222809 oaf other upstream 2426053 8941018 ~ 8946899 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other upstream 3162294 9677259 ~ 9713059 (-)

Expression


Co-expression Network