G221450


Basic Information

Item Value
gene id G221450
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 6326091 ~ 6416808 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU262213
TGATTGTCAACATCCTAAGATGATCATTGTTAATGTGTTCGAGTTGTAGTTTTCAATGTGTTATTTAGTACAATATTTGAAATGTGTATTGATAGAATTCAACAACTACAATTTGAGttacattataaaaatgtacCAAGTGAATAGatttctgttctctttttttactACAGAGAATGTgccaaatgaattttttttaatggtaattcactacatatacagtaaatagagattaggttaacaaaatgctggagtattcctttaatatatGTGATCAGAGCACAGCTGAAAATCAAAATAGGCAGTTATGTGCTTGGCCGCTCCACTGAACTTTTATGATCTATATGGAGATTTTATTGCCTCTGAAAAAGCTACAGCATCTCTCTACCTCACATCACTCAGGCAATTAAATGCTTTTACAAGCCAGAgataataaactgaaaaaacagAGCTATTGCTTGAGATAATCctacagtaataaaatattttcagtcaCGGATTCGTGATTATAAGCATATCTTGactaaaacatttatttgtaaacatgagAAACACACTACTTAGTGGTCATTTACTGCTAAGAAATGTATTGTATTACTGGCTGCATCTGGGTGATGAACTGCATGAGAGGGCCAATGTTGGTACCCTTCCATGTCTCAATAGCCCTGTATTGTAATACTGTTTTCGCTCTTGTCAACTTTCCCTCACAGTACAGAAGAGTGTATCAGTATCACTTCGGCCACTTGCAGCACAAGGGGAGTAGAGTTTAGGagaaaacagttttgtttttatgtttttttcctctttaaccCAAAATAGTTTTTAGACTTTGTGCTTCACCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU262213 True 843 lncRNA 0.34 2 6326091 6416808

Neighbor

gene id symbol gene type direction distance location
caln1 caln1,LOC108277467,LOC107582596,LOC107554278,LOC107659935,LOC108443712,LOC107672359,LOC103034584 coding downstream 27141 6233248 ~ 6298950 (-)
fam222bb LOC108277976 coding downstream 137721 6182048 ~ 6188370 (-)
txndc17 txndc17,LOC107661118,LOC107727907 coding downstream 164776 6158848 ~ 6161315 (-)
nxn nxn,typx coding downstream 169240 6094670 ~ 6156851 (-)
glod4 glod4,LOC102784280 coding downstream 239001 6083740 ~ 6087090 (-)
hip1 hip1,LOC107714882,LOC107659933,LOC107672373 coding upstream 30317 6447125 ~ 6488585 (-)
mos mos coding upstream 94428 6511236 ~ 6513733 (-)
mrpl28 mrpl28,LOC107659942,LOC107554268 coding upstream 110664 6527472 ~ 6532884 (-)
cul5a cul5,LOC107554266,LOC107714978,LOC107582587,LOC107701426 coding upstream 119240 6536048 ~ 6554451 (-)
itgae.2 NA coding upstream 141724 6558532 ~ 6579961 (-)
G221245 NA non-coding downstream 121161 6203064 ~ 6204930 (-)
G221214 NA non-coding downstream 233657 6091913 ~ 6092434 (-)
G221068 NA non-coding downstream 455464 5870401 ~ 5870627 (-)
G221026 NA non-coding downstream 530638 5795128 ~ 5795453 (-)
G220884 NA non-coding downstream 822149 5503040 ~ 5503942 (-)
G221461 NA non-coding upstream 74 6416882 ~ 6417625 (-)
G221448 dnhd1 non-coding upstream 97020 6513828 ~ 6514965 (-)
G221618 NA non-coding upstream 270781 6687589 ~ 6688311 (-)
G221638 NA non-coding upstream 342602 6759410 ~ 6759618 (-)
G221633 NA non-coding upstream 343848 6760656 ~ 6761787 (-)
dynll2a dynll2a,LOC107554284 other downstream 301738 6021145 ~ 6024353 (-)
LOC113532612 LOC108277970 other downstream 522118 5797928 ~ 5803973 (-)
G220990 NA other downstream 615200 5710098 ~ 5710891 (-)
nectin3a LOC108278241 other downstream 726716 5550419 ~ 5599375 (-)
LOC113544632 arap1 other downstream 1354572 4897950 ~ 4971519 (-)
LOC113532805 NA other upstream 202364 6619172 ~ 6653418 (-)
zgc:77784 LOC108277423 other upstream 975607 7392415 ~ 7463499 (-)
sorl1 sorl1,LOC107717255 other upstream 1988021 8404829 ~ 8478912 (-)
G222809 oaf other upstream 2524210 8941018 ~ 8946899 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other upstream 3260451 9677259 ~ 9713059 (-)

Expression


Co-expression Network