G221681


Basic Information

Item Value
gene id G221681
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 6867784 ~ 6870274 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU262483
CAGAGGCGCCAGATAATGGTTTCAGCGCTGCGCATTACAATAGGCACCACGTGCAGAAGTGCAGAGATGTTAGCCTCATTTCCATCAGTTTGGTACAAAACTGATTTTgaaataatgcattttcatattttaataccCTAAACTACATTTTTacgcaaaaaaaaacagtcaagagTCAGCATTTCTAAGAGCAGCCAGCACCCTGCTGTGACTAGTGGTGCACAGTTGGTATGCAGACATGTTAAGTGCAGGGAAAAGCACCGCACCCATTGAGGAAACACAACTAAATCCCGCATGTAATACGGAGTGTGAGAGAAATCTCAAGCGGCGTGTGTGTAGAATCTCATCCAAACACTACGGTCCCAAaggataaagaataaaatgagaagaaagaagaagttTGACTCACCAGACATTATTGGCGTGAAGAGGAGCAGGACCCAGTGAAACACCCCAAGCGCCTGTTCTTGGCTCTATTATATGGGCAAGAACGAAATATTGATAAAATTGTCACAAAGTCTCAATCAATCACCCTCACAACACTCTCACTATATACAATTATGCAGTAATATAGCCAGGGAAGCATTAGTTTGAGTTTTTCTGCCCTCATCCCTACTATTTAAAGTCCCAAGAACTCAATGATTTGACAATGATTTGATTGCGCGATACTTTCAATTTGAATATTCAAAGACTTCGCAAAAATACTTATATCTTCGCGATATTCGCCATCAGAGCGCATGTAAGAGCACCCCCTTTAATAGAATATTACACCATTTCACACtttgacacaaaaacaaaaatatatttttgacattttatcaCCCTTTTGATATTGATGCCAAGAGACTGGCTGTGGAGCTCTCTTTGCACTTTACAATATCCAAGAGCGAGCAAATGGCTTTccaaacaacacacaacaccagGCATATATCCCACAGTGCATAACCATatcaataaataagaaataatatgtCCTGTGGCTTGATTGTAAACCATTTTTCCAGAAATGTAGGCATGGTGGGCGTGGCATAtagtggcagccattttgacCATCAGAGCATGGGGAGCTTGTGCTCTCTGACATCCACTTTACACATGTTAACAGTTCtgtaatgaatattatttttattatgatcCTGTGTAACCTGAATTTTATATTAATCATATGTAATCTGTAGTGTTTTATGAAATAGCTGTCCTTATAGTAGGCTATTTGTCATAATGGTTATTTCTTATcccaaatattttaaaactcaGATAATCAAATGTTGCTATTGCAATCCTGATAATATTATAggacaacattttttttacactatttatattttacctACTAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU262483 True 1338 lncRNA 0.38 2 6867784 6870274

Neighbor

gene id symbol gene type direction distance location
LOC113532877 LOC108277444 coding downstream 26813 6831234 ~ 6840971 (-)
tubd1 tubd1,LOC107581164 coding downstream 111518 6748916 ~ 6756266 (-)
LOC113532622 NA coding downstream 262720 6583963 ~ 6605064 (-)
itgae.2 NA coding downstream 287823 6558532 ~ 6579961 (-)
cul5a cul5,LOC107554266,LOC107714978,LOC107582587,LOC107701426 coding downstream 313333 6536048 ~ 6554451 (-)
LOC113532633 pou2af1 coding upstream 12854 6883128 ~ 6888991 (-)
atf5b LOC108278369,LOC108435284,LOC103039462 coding upstream 61248 6931522 ~ 6936069 (-)
phldb1b phldb1,LOC108277892 coding upstream 88849 6959123 ~ 7039860 (-)
zgc:112083 LOC108278169,LOC108435289,LOC107726099,LOC107662779 coding upstream 293683 7163957 ~ 7172748 (-)
map6b LOC108277516 coding upstream 304078 7174352 ~ 7186264 (-)
G221659 NA non-coding downstream 61417 6806155 ~ 6806367 (-)
G221633 NA non-coding downstream 105997 6760656 ~ 6761787 (-)
G221638 NA non-coding downstream 108166 6759410 ~ 6759618 (-)
G221618 NA non-coding downstream 179473 6687589 ~ 6688311 (-)
G221448 dnhd1 non-coding downstream 352819 6513828 ~ 6514965 (-)
G221682 colca2 non-coding upstream 1463 6871737 ~ 6871979 (-)
G221683 colca2 non-coding upstream 2557 6872831 ~ 6873359 (-)
G221812 NA non-coding upstream 252443 7122717 ~ 7124202 (-)
G221814 NA non-coding upstream 263243 7133517 ~ 7178296 (-)
G221844 NA non-coding upstream 348392 7218666 ~ 7220929 (-)
LOC113532805 NA other downstream 214366 6619172 ~ 6653418 (-)
dynll2a dynll2a,LOC107554284 other downstream 843431 6021145 ~ 6024353 (-)
LOC113532612 LOC108277970 other downstream 1063811 5797928 ~ 5803973 (-)
G220990 NA other downstream 1156893 5710098 ~ 5710891 (-)
nectin3a LOC108278241 other downstream 1268409 5550419 ~ 5599375 (-)
zgc:77784 LOC108277423 other upstream 522141 7392415 ~ 7463499 (-)
sorl1 sorl1,LOC107717255 other upstream 1534555 8404829 ~ 8478912 (-)
G222809 oaf other upstream 2070744 8941018 ~ 8946899 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other upstream 2806985 9677259 ~ 9713059 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other upstream 3437776 10308050 ~ 10312516 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009125 NA non-coding NC_007126.7 CM002899.2 17751150 ~ 17754926 (-)
grasscarp (Ctenopharyngodon idella) G9136 NA non-coding CI01000000 null 14035245 ~ 14035575 (-)
grasscarp (Ctenopharyngodon idella) G225940 NA non-coding CI01000053 null 1812634 ~ 1818169 (+)
bowfin (Amia calva) AMCG00004429 NA misc CM030121.1 CM030121.1 49411207 ~ 49425182 (-)
tiger barb (Puntius tetrazona) G105601 LOC107713465,LOC107717180,LOC107597510 non-coding NC_056713.1 CM032082.1 11180032 ~ 11185102 (+)